AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00907 ATGGAATCGAACATAGAAGAAGCGTTTAGAGCGAGAGAGCATGCAGAGAGGCTATTTTTGGTAAATGATTACATGGGTGCGAAGCAGTATGCGATAAAGGCTCAAGCTTTATGCCCACAGCTCGAGGGTGCGTCTCAAATGGTGGCTACTTTCGACATATACGCTGCTGCTCAGACGAAAATAAACGGTGAAATTGATTTGTATTCGGTTCTTGGATTAGGCCCGTCTGCAGAGAAATCTGTGTTGAAGAAACAATACAAAAAGATGGCGGTTCTACTTCATCCGGATAAGAATAAGACGATGGGAGCTGATGAGGCGTTTAAGCTTGTATCAGAAGCATGGAGTGTGTTATCGGATAATACTAAAAGGAAAAATTATGATGTTAGAAGAAATAAGCAGTTAGCAGCATCAGGATCTCGACTTGATACTTTCTGGACTGTTTGCACTACTTGTCGTGTTCAGTATGAATATCTTAGAAAATACGTGAATAAAAGACTTTCGTGTAAGAATTGTCGTGGGGTTTTCGTAGCTCTTGAAACGGGATCAGCTCCTGTTACTTATTGTCCTTGGTCTTATACGAGTGAAAATAACGGTTATGCAAACCATTCGTATAATACTAACGCCGCTACGTATATACCAAATTCATCAGTATGTTTTACAGGCAATGGGTCGTCTACTTATCCACCTGCACACACATTCGAATATGGGAGCAATGCAACCTTCCAGTGGAACACTTCTACGGGTGCTTCTGATCATAGTGTTATTCATAAGAAGAATAAAAGACGACAATCTCAGGTGGGTCCTGGTGAAATCAAGGTTGTTAAGCTTGGTAGGCCTCCAAAAAAGATAAAGATTGAACCCGGAAATGGAACTCAACCCACAAATGGTGAAATGTTATTCAAAACCGAGCCTCATGTGGCATCGTCTAATGGGCATATTGTCAGTGAGACGTCTGTCAAGTGGTATCCTCCTCCACCTACTTTCGATGTTAGGAAGTTGTTAATTGACAAAGCGAGATCAGTCATTCGGGTTAAGTTAGAAGAATTGAAATTAGCTTCAGAAAACGAGAAAGCGGTGAAAAAGACGGGTCCAGTTCCGATAACCGTCCCAGACCCAGATTTCCATGATTTTGATACGGATCGTTTGGAGGAAGTATTCAAACCAAAGCAAATATGGGCTATATATGATGAAGAAGACGGTATGCCTCGTTTATACTGTCTAATTCGCGAGGTTATATCCGTGAAGCCATTTCAGCTTTACATTAGCTACTTGAACTCAAAAACCGACACTGAATTTGGTTGTGTTAAATGGATAGAATCGGGTTTCACTAAATCATGTGGAAACTTCCGGGTTTTCCATTCGGATATCGTTGACCAAGTCAACATATTTTCTCATCTTTTGGGACGAGAAAAAGCCGGTAGAGGTGGTTGTGTTAAAATATACCCGAAAAGTGGTGATGTATGGGCAGTTTATCGAAACTGGTCAGTTGACTGGAACCGCAAGACACCAGAAGAAGTGAGGCATCAGTATGAAATGGTTGAAATTCTTGAAGATTATTCTGAAGAGCTTGGAATACGTGTAACTCCGTTGATTAAGTTAAACGGTTATAAAACAGTTTATCAAAGGGACGAGAAAAGGAATGGGACCCGCTGGATCCCGAGAAGGGAAATGGTAAGATTTTCACATCAAGTTCCGTCTTATTTACTTAAAGGTCAAGGACTTAACTTGCCTGATGGATGTTGGGATCTTGACCCTGCTGCAACGCCTGAAGAACTTCTTCAGGCTGCAGTAGATGAAGAAAAACTCGATCTTAATGTACAAACATAA 1827 41.11 MESNIEEAFRAREHAERLFLVNDYMGAKQYAIKAQALCPQLEGASQMVATFDIYAAAQTKINGEIDLYSVLGLGPSAEKSVLKKQYKKMAVLLHPDKNKTMGADEAFKLVSEAWSVLSDNTKRKNYDVRRNKQLAASGSRLDTFWTVCTTCRVQYEYLRKYVNKRLSCKNCRGVFVALETGSAPVTYCPWSYTSENNGYANHSYNTNAATYIPNSSVCFTGNGSSTYPPAHTFEYGSNATFQWNTSTGASDHSVIHKKNKRRQSQVGPGEIKVVKLGRPPKKIKIEPGNGTQPTNGEMLFKTEPHVASSNGHIVSETSVKWYPPPPTFDVRKLLIDKARSVIRVKLEELKLASENEKAVKKTGPVPITVPDPDFHDFDTDRLEEVFKPKQIWAIYDEEDGMPRLYCLIREVISVKPFQLYISYLNSKTDTEFGCVKWIESGFTKSCGNFRVFHSDIVDQVNIFSHLLGREKAGRGGCVKIYPKSGDVWAVYRNWSVDWNRKTPEEVRHQYEMVEILEDYSEELGIRVTPLIKLNGYKTVYQRDEKRNGTRWIPRREMVRFSHQVPSYLLKGQGLNLPDGCWDLDPAATPEELLQAAVDEEKLDLNVQT 608
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00907 608 PANTHER BNAC03G44070D PROTEIN 1 588 - -
Glco3g00907 608 Pfam DnaJ domain 66 127 IPR001623 -
Glco3g00907 608 Gene3D DnaJ domain 54 145 IPR036869 -
Glco3g00907 608 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Glco3g00907 608 CDD DnaJ 66 119 IPR001623 -
Glco3g00907 608 PRINTS DnaJ domain signature 102 122 IPR001623 -
Glco3g00907 608 PRINTS DnaJ domain signature 86 101 IPR001623 -
Glco3g00907 608 PRINTS DnaJ domain signature 68 86 IPR001623 -
Glco3g00907 608 SUPERFAMILY Chaperone J-domain 62 132 IPR036869 -
Glco3g00907 608 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Glco3g00907 608 Pfam Domain of unknown function (DUF3444) 367 572 IPR024593 -
Glco3g00907 608 SMART dnaj-3 65 122 IPR001623 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00907 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
99452 Glco3g00907 Glco9g03663
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr1:97655236 Glco3g00907 Glco-Chr3:52047938 dispersed
Glco Glco-Chr3:52047938 Glco7g05344 Glco-Chr7:516839528 dispersed
Glco Glco-Chr1:42978726 Glco3g00907 Glco-Chr3:52047938 transposed
Glco Glco-Chr1:705162199 Glco3g00907 Glco-Chr3:52047938 transposed
Glco Glco-Chr7:587071507 Glco3g00907 Glco-Chr3:52047938 transposed
Glco Glco-Chr9:475575300 Glco3g00907 Glco-Chr3:52047938 transposed
Glco Glco-Chr3:52047938 Glco7g06702 Glco-Chr7:570650441 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Glco1g00996 . 10 204 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.472 1.10e-22 97.8
Glco1g01260 . 71 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 4.58e-11 59.7
Glco1g01895 . 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.562 1.06e-31 124.0
Glco1g03483 . 43 142 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.545 7.97e-07 45.4
Glco2g01726 ACH 7 149 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.462 1.15e-26 105.0
Glco2g01730 ACH 7 203 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.745 1.34e-23 98.2
Glco2g02442 . 7 309 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.567 7.39e-92 274.0
Glco3g00907 ACH 7 288 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.208 1.03e-30 120.0
Glco3g01926 . 194 422 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 34.52 1.44e-39 141.0
Glco3g01927 . 17 164 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 43.75 3.49e-37 138.0
Glco5g02367 . 65 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 37.5 3.73e-09 55.5
Glco5g04374 . 66 117 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.538 4.41e-06 43.5
Glco6g01474 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.641 1.82e-09 57.8
Glco6g06617 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 44.615 2.48e-25 105.0
Glco7g00465 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.101 8.50e-28 113.0
Glco7g04546 ACH 7 141 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.0 5.97e-24 101.0
Glco7g06702 ACH 10 206 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.98 1.20e-26 108.0
Glco8g03736 . 5 230 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.672 2.69e-30 115.0
Glco8g06444 . 7 199 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 27.753 5.39e-19 86.7
Glco9g00896 . 343 422 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 53.75 5.62e-17 72.0
Glco9g03663 ACH 7 308 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 27.796 2.73e-28 113.0
Glco9g05745 . 7 136 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 26.786 3.22e-09 55.8
Glco10000144.1g00001 . 7 202 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.636 5.07e-31 122.0
Glco10000350.1g00028 . 7 207 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 28.049 6.00e-22 95.5
Glco10000366.1g00007 . 7 208 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.681 4.15e-27 110.0
Glco10000485.1g00002 . 192 421 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT5G64360 34.63 1.41e-33 131.0