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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00913 ATGCTAGATTCTAGTGATCAACTTGAGATTGTGTTACTCGTTGCAGTAGGTTCAAATATGAATGAATCAGTTCTGTCTTCTATCAAACCGCTGAGGCGATTGTTCTTGATTTCGTGTTATCATTGTCTGCTGGCTTTTCGAGTAGGTGCAGCAGAAAAGGCTTTAGCAAAAGAAACTGTAGCATTATCACCAGAACAAACCGAAACAAATCTTAGTGTGACGGTTGTGGGTGCTTCAGGCGATCTTGCTAAGAAAAAGATTTTCCCTGCCCTTTTCGCTCTCTTTTATGAGGATTGTTTACCACAGAATTTTATTATATTTGGTTATGCTCGAACCAAAATGTCCGATGAGCAGCTGAGGGAGATGATTAGTAGAACATTAACTTGCAGAATTGATAAGAGGGAAAACTGTGGTGACAAAATGGATGAGTTTCTTAACAGATGCTTTTACCACTCGGGTCAATACGGATCTGAGGAAAATTTTGCAGAGTTAGACACCAAGCTAAAAGAGAAAGAGGGCGGAAAACTGTCGAATAGGTTGTTTTACTTGTCAATACCTCCAGACATTTTTGTGGATGTAGTACGTTGTGCGAGTGGAAAAGCTTCTTCTAAAAATGGGTGGACACGGGTGATAGTCGAGAAACCATTTGGCCGTGACTCAGAATCATCCGGAGAGCTAACAAGAAGCTTGAAGAAGTACTTAGCTGAGGAGCAAATCTTTAGGATCGATCACTATTTGGGAAAGGAGCTTGTGGAGAATTTATCAGTTCTTCGTTTCTCAAATCTTATTTTTGAACCACTTTGGTCAAGAAACTACATTCGCAGTGTACAATTTATATTTTCAGAAGACTTTGGTACAGAAGGACGAGGGGGTTACTTTAACAACTACGGAATCATTCGCGATATAATGCAAAACCACCTTCTGCAAATTTTAGCATTGTTTGCAATGGAAACACCCGTTAGTTTAGATGCTGAGGACATTAGAAATGAAAAGGTCAAAGTTTTGAGGTCAATGAGACAACTCAAACTTGAAGATGTAGTCGTTGGTCAATATAAAGGGCATAGCAAGGGGGGAAAGTCGTTTTTAGGATACACAGAGGACCCGACTGTCCCAAACGATAGCATCACTCCAACTTTTGCAGCAGCAGCACTCTTTATTGATAATGCTCGGTGGGATGGTGTTCCTTTTCTCATGAAAGCCGGAAAGGCCCTGAACACTAGACGGGCGGAGATTAGAGTTCAATTCAGACATGTACCAGGCAACCTGTATAAACGAAACTTTGGGACAGATATGGATAAAGCTACAAACGAACTTGTGCTTCGTGTGCAGCCCGATGAAGCCATTTTTCTTAAGATCAATAACAAGATTCCTGGTCTTGGAATGAGGCTCGACAGAAGTGACCTTAATTTGCTCTACAGCATGAGGTATCCAAAGGAAATACCGGATGCATACGAGAGGCTTCTATTGGACGCGATAGAAGGAGAAAGGAGATTGTTTATAAGAAGTGACGAGCTTGATGCTGCATGGTCTATATTTACCCCATTGTTGAAAGAACTTGAGTCTAAGAAGATTGCACCGGAGTTATATCCGTATGGAAGTAGAGGACCGGTTGGAGCTCATTATTTAGCTGCAAAGTACAACGTTCGGTGGGGTGATCTTGCTGGCGATGACTAA 1674 41.52 MLDSSDQLEIVLLVAVGSNMNESVLSSIKPLRRLFLISCYHCLLAFRVGAAEKALAKETVALSPEQTETNLSVTVVGASGDLAKKKIFPALFALFYEDCLPQNFIIFGYARTKMSDEQLREMISRTLTCRIDKRENCGDKMDEFLNRCFYHSGQYGSEENFAELDTKLKEKEGGKLSNRLFYLSIPPDIFVDVVRCASGKASSKNGWTRVIVEKPFGRDSESSGELTRSLKKYLAEEQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRNYIRSVQFIFSEDFGTEGRGGYFNNYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRQLKLEDVVVGQYKGHSKGGKSFLGYTEDPTVPNDSITPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKRNFGTDMDKATNELVLRVQPDEAIFLKINNKIPGLGMRLDRSDLNLLYSMRYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELESKKIAPELYPYGSRGPVGAHYLAAKYNVRWGDLAGDD 557
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00913 557 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 75 253 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 62 256 IPR036291 -
Glco3g00913 557 Gene3D Dihydrodipicolinate Reductase; domain 2 242 551 - -
Glco3g00913 557 Coils Coil 324 344 - -
Glco3g00913 557 Gene3D - 67 241 - -
Glco3g00913 557 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 70 552 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 PIRSF G6PD 58 554 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 PRINTS Glucose-6-phosphate dehydrogenase signature 233 261 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 PRINTS Glucose-6-phosphate dehydrogenase signature 285 302 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 PRINTS Glucose-6-phosphate dehydrogenase signature 209 222 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 PRINTS Glucose-6-phosphate dehydrogenase signature 390 416 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 PRINTS Glucose-6-phosphate dehydrogenase signature 303 319 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 FunFam Glucose-6-phosphate 1-dehydrogenase 242 551 - -
Glco3g00913 557 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 243 550 - -
Glco3g00913 557 FunFam Glucose-6-phosphate 1-dehydrogenase 67 241 - -
Glco3g00913 557 NCBIfam glucose-6-phosphate dehydrogenase 72 551 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 243 249 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Glco3g00913 557 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 67 549 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Glco3g00913 557 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 256 550 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00913 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:52729335 Glco7g02043 Glco-Chr7:341599596 dispersed