AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glco3g00919 | ATGTCATCAAAATCCACTACTAGTAGAACTAAAAGCAGCTCATCAAGATTGAAACATGATGCTAGAGTTGTGTCCCAAACCCCAATTGATGCTAAGCTTCATGTTGATTTTGAATTATCTGGTGACAACAAGTTTGATTATTCGGCTTCTGTTGATGTTAATAACGCGTCTACTTCGAATAGTACTTTCGTCCCGTCTTCCACTGTTTCCGCTTATCTTCAAAAGATGCAAAGAGGTAGTTTAGTTCAGCCTTTTGGTTGTATGATTGCTATTGATGATCAGAGTTTGACTGTTTTGGCGTATAGTGAGAACGCCCTTGAAATGCTTGATTTAGCGCCACATGCTGTCCCGAATATTGAGCAGCAAGATGCTTTGACGTTTGGGACGGATATTAGGACGTTGTTTAGGTCTTCCAGTGCTTCTGCGCTTCAGAAAGCAGCGAATTTTCCCGAGGTTAATTTGTTGAACCCGATTTTGGTTCATTGTAAGAGTTCGGGTAAACCCTTTTACGCGATTTTGCATAGGAATGATGTCGGGTTGGTTATAGATTTAGAGCCTGTGAATCCTGCTGATGTGCCTGTTACAGCTGCTGGTGCTTTAAAGTCGTATAAGCTAGCTGCTAAAGCGATTTCTAGGTTACAGTCTTTGCAAAGTGGGAATACTTCAAGACTTTGTGATGTGTTGGTTAAAGAAGTGAGTGAGCTGACGGGTTATGATCGTGTTATGGTTTATAAGTTTCATGAAGATGAACATGGGGAAGTTATTGCCGAGTGTCGAAAGACTGACCTCGAGCCTTATCTTGGGTTGCATTACCCTGCTACTGATATCCCACAAGCTTCACGGTTTCTTTTTATGAGAAATAAAGTTAGGATGATTTGTGATTGTTTGGCTACGCCAGTGAAAGTGATTCAATCAAAACATTTAGACCAGCCATTGAATCTTTCGGGGTCCGCTTTAAGAGCACCACATGGATGTCATGCACAATATATGTCAAATATGGGGTCAATTGCGTCGCTTGTGATGTCTGTGACAATCAACGATGGCGATGACGATGATGATGATGATGCCAACGAGTCTGAAAGTGGGATAAATCAGCAACAAAAACAAAAGGGGAAAAGACTATGGGGTTTAGTCGTTTGTCATCATTCAAGTCCTCGGTTTTTACCATTTCCTTTAAGGTACGCTTGTGAATTTCTGATTCAAGTTTTCAGCGTTCAAATAAGTAAAGAAGTTGAGTTGACTAGTCAACTACGAGAAAAACATATCTTGAAAACACAATCTGTGCTTTGTGATATGCTTTTGAGAGATGCTCCTATAGGGATCGTGACTCAATCACCGAATGTAATGGATCTTGTTAAATGTGACGGGGCTGCACTGTACTACAAAGACAAGTTATGGGTACTCGGGGTAACACCAACGGAGTATCAAATCAAAGATATAGCAAAGTGGCTTCTAGAAGAACATGTTGGGAGTACAGGGTTAAGTACGGATAGTTTAGTGGATGCTGGATATCCAAACGCATATGTTCTTGGGAAAGCCGTTTGTGGAATGGCAGCTGTTAAAATCACCTCTAAAGATTTTCTTTTTTGGTATCGCTCACATACTGCAAAAGAACTGAAATGGGGTGGTGCCAAACATGATCCGGATGATAAGGATGATGTGAGAAAAATGCATCCGCGGTCATCATTTAAGGCGTTTTTGGAAGTTGTAAAATACAGGAGTTTACCATGGGAAGATGTGGAAATGGACGCTATTCATTCGTTACAGTTGATATTGAGAGGGTCTTTGCAAAATGATGATGAAACGAGTAATGGTGATGATAAAAAGATTGTTAGTGTCCCTACTGTCGATACGAGTATCCAAAGGGTTGATGAATTGAGGGTTGTGGCTAATGAAATGGTTAGGCTTATTGAGACAGCTTCTGTTCCTATATTTGCTGTTGATGGCGACGGGAATATTAGTGGTTGGAATGATAAAATGGGTGAGCTTACTGGGCTGCCGTTGCTTGAAGCTGTTGGTGTCCCGTTAGTTAATTTGGTTGTTGATGATTCGGTTGATGAAGTCAAAGCCATGCTCTCCTCTGCTTTACGAGGCATAGAGGATAAAAACGTTGAAATCAACTTTAAATGTTTCAAGAGTCAAGAAAGCGACAATCACATCACCCTTGTTACAAACGCTTGTTGTAGCCGTGATTTACAAGAAAATATCGTGGGGGTATGCTTTGTTGGACATGATCTAACGGCTCAAAAGTTAATCACAGACAAATATACAAAAGTTAAAGGTGATTACACTAGTATAGTCCGCAGTCCATGTGCACTCATTCCTCCAATTTTCATGATGGATGAGTACGGGAAATGCTTAGAGTGGAATGACGCCATGCAAAGATTAACCGGTTTGAGGAGGGAAGAAGCCACCAATAAGATGCTTTTAGGTGAAGTTTTCACCATTGGTAGTTTTGGTTGTCGGGTCAAAAGTGAAGATACTTTGACCCGACTAAGAATACTACTAAACGAGGTGATTTCAGGGTTGGATTCAGATAAATTGTTGTTTGGGTTGTTTGACCAAAATGGTAAGTATGTTGAGGCATTACTTTCTGCTAACAAAAGGGTTGATTCAGAGGGAAAGATTACAGGCGTTTTGTGTTTTTTACAAGTGACAAGCCCTGAGCTTCAACATGCTATGTTGGTGCAACGACTGTCTGAACAGGCTGCTTTGAATAGTCTTACAAAGGTGACTTATTTGCGTCATGAACTTAAGAGTGGATTGAATGGGATTAAGTGTATTGAAGATCTGATGGAATCGAGTGAGCTGGGTGGAGAGCAGAGACGCATTTTACGTAAAAGTCATTTGTGTCGAGAGCAATTAGTACAGATTGTTGATGATGCTGATATACAGAGCATTGAGGAATGTTATACGGAAATGAAATGTGCTGAATTCAGACTCGGGGAGTCATTGGAGGTGGTTTTAAACCAAGTAACGCTTTTGGGCCGTGAGCGGAAGGTGGAAGTCATTTATGATGTGCCCGAACAAGTGTTATCCTTGTCTTTATTTGGTGACAATTTGAGGCTGCAACAAGTCCTTTCAGACTTCTTGTCAAATGCTCTCACCTTCACCCCTGAACTCGAAGGATCTTCAGTTTCGTTTCGTGCGAGTCATAGGATGGAACGCATAGGAGCAAAAATACAAGTGGCACATCTCGAGTTCAGGATCACCCATCCAGCGCCAGGGATACCCGAGAAGTTAGTTCAAGATATGTTTCAGACCAGCCGAAGTGTTTCGAGAGAAGGTCTTGGACTTTACATAAGTCAAAAGCTAGTAAAGACTATGAACGGAACTGTACAATATCTTAGAGAGGCTGAGAGAGCTTCTTTCATCGTCTTGATTGAGTTTCCTGTAGCGCTCTCATTGACTGCCGACAACAAACGTTCAAAAAGAATCTGA | 3441 | 41.24 | MSSKSTTSRTKSSSSRLKHDARVVSQTPIDAKLHVDFELSGDNKFDYSASVDVNNASTSNSTFVPSSTVSAYLQKMQRGSLVQPFGCMIAIDDQSLTVLAYSENALEMLDLAPHAVPNIEQQDALTFGTDIRTLFRSSSASALQKAANFPEVNLLNPILVHCKSSGKPFYAILHRNDVGLVIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLQSGNTSRLCDVLVKEVSELTGYDRVMVYKFHEDEHGEVIAECRKTDLEPYLGLHYPATDIPQASRFLFMRNKVRMICDCLATPVKVIQSKHLDQPLNLSGSALRAPHGCHAQYMSNMGSIASLVMSVTINDGDDDDDDDANESESGINQQQKQKGKRLWGLVVCHHSSPRFLPFPLRYACEFLIQVFSVQISKEVELTSQLREKHILKTQSVLCDMLLRDAPIGIVTQSPNVMDLVKCDGAALYYKDKLWVLGVTPTEYQIKDIAKWLLEEHVGSTGLSTDSLVDAGYPNAYVLGKAVCGMAAVKITSKDFLFWYRSHTAKELKWGGAKHDPDDKDDVRKMHPRSSFKAFLEVVKYRSLPWEDVEMDAIHSLQLILRGSLQNDDETSNGDDKKIVSVPTVDTSIQRVDELRVVANEMVRLIETASVPIFAVDGDGNISGWNDKMGELTGLPLLEAVGVPLVNLVVDDSVDEVKAMLSSALRGIEDKNVEINFKCFKSQESDNHITLVTNACCSRDLQENIVGVCFVGHDLTAQKLITDKYTKVKGDYTSIVRSPCALIPPIFMMDEYGKCLEWNDAMQRLTGLRREEATNKMLLGEVFTIGSFGCRVKSEDTLTRLRILLNEVISGLDSDKLLFGLFDQNGKYVEALLSANKRVDSEGKITGVLCFLQVTSPELQHAMLVQRLSEQAALNSLTKVTYLRHELKSGLNGIKCIEDLMESSELGGEQRRILRKSHLCREQLVQIVDDADIQSIEECYTEMKCAEFRLGESLEVVLNQVTLLGRERKVEVIYDVPEQVLSLSLFGDNLRLQQVLSDFLSNALTFTPELEGSSVSFRASHRMERIGAKIQVAHLEFRITHPAPGIPEKLVQDMFQTSRSVSREGLGLYISQKLVKTMNGTVQYLREAERASFIVLIEFPVALSLTADNKRSKRI | 1146 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glco3g00919 | 1146 | CDD | PAS | 773 | 884 | IPR000014 | - | |
| Glco3g00919 | 1146 | CDD | HATPase-Phy-like | 1017 | 1130 | IPR044767 | - | |
| Glco3g00919 | 1146 | FunFam | Phytochrome | 625 | 756 | - | - | |
| Glco3g00919 | 1146 | ProSiteProfiles | PAS repeat profile. | 629 | 699 | IPR000014 | - | |
| Glco3g00919 | 1146 | FunFam | Phytochrome | 416 | 548 | - | - | |
| Glco3g00919 | 1146 | ProSiteProfiles | Histidine kinase domain profile. | 913 | 1134 | IPR005467 | - | |
| Glco3g00919 | 1146 | MobiDBLite | consensus disorder prediction | 347 | 368 | - | - | |
| Glco3g00919 | 1146 | Gene3D | PAS domain | 775 | 890 | - | - | |
| Glco3g00919 | 1146 | Gene3D | - | 416 | 589 | IPR043150 | - | |
| Glco3g00919 | 1146 | PIRSF | Phytochrome-conventional | 1 | 1141 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Glco3g00919 | 1146 | SMART | pas-2 | 761 | 830 | IPR000014 | - | |
| Glco3g00919 | 1146 | SMART | pas-2 | 631 | 697 | IPR000014 | - | |
| Glco3g00919 | 1146 | Gene3D | PAS domain | 619 | 760 | - | - | |
| Glco3g00919 | 1146 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Glco3g00919 | 1146 | ProSiteProfiles | PAS repeat profile. | 759 | 814 | IPR000014 | - | |
| Glco3g00919 | 1146 | SMART | HKATPase-4 | 1018 | 1134 | IPR003594 | - | |
| Glco3g00919 | 1146 | Pfam | PAS fold | 71 | 187 | IPR013654 | GO:0006355(InterPro) | |
| Glco3g00919 | 1146 | PANTHER | OS08G0260000 PROTEIN | 1 | 1009 | - | - | |
| Glco3g00919 | 1146 | SMART | gaf-1 | 220 | 421 | IPR003018 | GO:0005515(InterPro) | |
| Glco3g00919 | 1146 | NCBIfam | PAS domain S-box protein | 636 | 750 | IPR000014 | - | |
| Glco3g00919 | 1146 | SUPERFAMILY | GAF domain-like | 419 | 596 | - | - | |
| Glco3g00919 | 1146 | FunFam | Phytochrome | 971 | 1132 | - | - | |
| Glco3g00919 | 1146 | Pfam | PAS fold | 765 | 884 | IPR013767 | GO:0006355(InterPro) | |
| Glco3g00919 | 1146 | Pfam | PAS fold | 632 | 745 | IPR013767 | GO:0006355(InterPro) | |
| Glco3g00919 | 1146 | SUPERFAMILY | ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase | 980 | 1131 | IPR036890 | - | |
| Glco3g00919 | 1146 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 620 | 742 | IPR035965 | - | |
| Glco3g00919 | 1146 | Gene3D | - | 201 | 572 | IPR029016 | - | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 559 | 577 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 441 | 461 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 651 | 666 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 744 | 764 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 235 | 254 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 320 | 341 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 526 | 545 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 135 | 157 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 632 | 648 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | PRINTS | Phytochrome signature | 724 | 741 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | SUPERFAMILY | GAF domain-like | 200 | 408 | - | - | |
| Glco3g00919 | 1146 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1018 | 1131 | IPR003594 | - | |
| Glco3g00919 | 1146 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 320 | 329 | IPR013516 | - | |
| Glco3g00919 | 1146 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 220 | 401 | IPR016132 | - | |
| Glco3g00919 | 1146 | Gene3D | PAS domain | 79 | 323 | - | - | |
| Glco3g00919 | 1146 | CDD | PAS | 640 | 706 | IPR000014 | - | |
| Glco3g00919 | 1146 | Gene3D | - | 951 | 1126 | IPR036890 | - | |
| Glco3g00919 | 1146 | Pfam | GAF domain | 222 | 410 | IPR003018 | GO:0005515(InterPro) | |
| Glco3g00919 | 1146 | Pfam | Phytochrome region | 424 | 599 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Glco3g00919 | 1146 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 776 | 881 | IPR035965 | - | |
| Glco3g00919 | 1146 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 76 | 189 | IPR035965 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Glco3g00919 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Glco | Glco-Chr3:52795636 | Glco3g02503 | Glco-Chr3:221999219 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Glco1g01446 | ACH | 1 | 921 | Histidine Kinase gene family | AT5G10720 | 59.13 | 0.0 | 1061.0 | |
| Glco1g03511 | . | 106 | 1057 | Histidine Kinase gene family | AT2G01830 | 68.887 | 0.0 | 1326.0 | |
| Glco2g02102 | . | 79 | 1117 | Histidine Kinase gene family | AT2G47430 | 37.047 | 0.0 | 585.0 | |
| Glco3g00919 | . | 2 | 1110 | Histidine Kinase gene family | AT5G35840 | 60.796 | 0.0 | 1448.0 | |
| Glco3g02503 | . | 1 | 1120 | Histidine Kinase gene family | AT1G09570 | 74.018 | 0.0 | 1790.0 | |
| Glco3g06366 | . | 2 | 1096 | Histidine Kinase gene family | AT4G18130 | 61.483 | 0.0 | 1415.0 | |
| Glco4g02956 | ACH | 53 | 1150 | Histidine Kinase gene family | AT2G18790 | 73.297 | 0.0 | 1724.0 | |
| Glco5g00837 | ACH | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 60.194 | 0.0 | 1062.0 | |
| Glco5g03842 | . | 759 | 921 | Histidine Kinase gene family | AT5G10720 | 53.571 | 5.15e-57 | 192.0 | |
| Glco5g05159 | ACH | 36 | 1154 | Histidine Kinase gene family | AT2G18790 | 76.875 | 0.0 | 1831.0 | |
| Glco5g06049 | . | 5 | 105 | Histidine Kinase gene family | AT5G10720 | 54.902 | 2.40e-27 | 102.0 | |
| Glco7g00861 | . | 25 | 1197 | Histidine Kinase gene family | AT2G17820 | 59.262 | 0.0 | 1376.0 | |
| Glco8g03247 | . | 239 | 339 | Histidine Kinase gene family | AT4G18130 | 80.198 | 7.66e-54 | 178.0 | |
| Glco8g03403 | . | 27 | 1206 | Histidine Kinase gene family | AT2G17820 | 62.531 | 0.0 | 1469.0 |