AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00928 ATGGCGGCAATACTAGCTTCCAACAGCTGCTATTGCCGTGATGTGCAATTCGTGAATCAAGGAAGAACAACAGATAGTCTAAGCTTCTCGAGATCTGTATCTAACCAAAAATTAGACAACCAACATGAATGTAGTTTACCCAAAAGTCAAAGGTTCCCCAAGTTTCATGTCAAGATGCAGCAGACAGAATCACCCATGAAATATGGCACCAATGGCCGACCTGCAAATGGCCAACCTGTAAAATTGGGTGCTAATGGTAAACCAGTGAATTTGGGTGCTAATGGACAACCCGTGAAATTAGGTAGCAAAGGTCAACCGATCACAATGGTTTCAACCAGTGATGTTGTGAATAACAAACCAACCGTAGGATTAGTGAACGGGTCGGCAAAAGCTGTTAATGGAACAAGTCTTGTTAGGAGAGAGACCACACCGCCGCTAGTTAAGTCTGTAAAAGTCAGAGAATCCACAGGCTTTCCGCCTTCTGAGGAACTGAGGGTCTTGCCGTCAGATGAAAGTTTCAGTTGGGCGAATGAAAATTACAATTCGGTACAAAGATCAATAGATGTGTGGTCTTTTGTTCTTTCTTTACGTGTTCGTGTTTTATTAGACAATGCTAAGTGGGCGTATCCTGGAGGCTTCACAGAAGACAAGCAGAAAGGCAGAAGACGAAACACAGCCGCATGGTTAAGAGAGCGTGTACTTCAACTTGGCCCAACTTTTATTAAACTTGGGCAGTTATCTTCAACAAGGTCAGATCTATTTCCACGTGAGTTTGTAGACGAGCTTGCGAAATTACAGGATAGAGTACCGGCATTCTCACCAGAAAAAGCGAAGGGTTTCATTGAAAAAGAATTGGGTGCTCCGGTTAATATAATCTTTAAGGAGTTTGAAGAACGACCAATTGCAGCTGCTAGTCTTGGTCAGGTACATCGTGCAATCTTACATAATGGAGAGAAAGTAGTTGTTAAAGTTCAAAGACCTGGTCTGAAGAAACTTTTTGACATCGATTTACGGAATCTAAAGCTAGTCGCAGAGTATTTTCAAAGAAGTGAAACTCTTGGTGGCCCAACAAGGGACTGGATGGGCATCTATGATGAATGTGCAAAGATCTTGTACCAGGAGATTGATTATATAAATGAAGGGAAAAATGCTGATAGATTTCGTCGAGATTTTCGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTACACTGCAACGAAGGTGCTGACTTTGGAGTATGTTCCAGGCATTAAGATCAACAATGTAGATGCTATAAAAGACAGGAGTTACAGTCGATCCCGGATCTCTTCACGCGCCATTGAATCATACTTGATTCAGATCCTGAAAACAGGTTTCTTTCATGCTGATCCTCATCCCGGAAATCTTGCTATTGACTTGGATGAATCTCTAATCTACTACGATTTTGGTATGATGGGGGAGATTAAGTCCTTCACCAGAGAAAGATTGATGGATCTCTTTTATGCGGTTTATGAAAAAGATGCAAAAAAGGTTATGAACAGTTTGGTAAGTCTTGAAGCGCTTCAACCTACCGGAGACATGTCACCGGTTAGGCGATCTGTTCAGTTCTTTTTGGACAATTTGCTGAATCAATCACCAGACCAGGAGACAACTTTGGCTGCCATAGGCGAGGATCTATTTTCTATAGCAACAGATCAGCCTTTTCGGTTCCCATCGACGTTCACGTTTGTAATTAGGGCGTTTTCTACTCTTGAAGGAATTGGCTACTCACTTGACCCAGATTTTTCATTTGTTAAGATTGCTGCACCTTACGCACAGGAACTGCTTGATCTCAAAGAACAGCGGCCAAGTGGAACACAACTTGTTGCAGAAATGCGTAAACAAGCTGACGATGCAAGATCAAATACCATGTCAATGCCTTACAGAGTTCAGCGAATTGAAGAGTTCGTGAAACAATTAGAAATAGGAGATGTTAAACTCCGTGTCAGAGTTCTTGAGTCTGAACGAGCAGCTAAGAAGGCAACAATTTTGCAAATGGCAACAATGTATACAATATTAGGGGGTACCCTTGTAAACATTGGTGTCACATTTAGCACCCAAGGCAGCCAACTTATAGCAAACGGGTCCTTTGTTGCCGCAGGTGTTTTCATAGCTTTGCTTATTAGGTCAATGCAAAGGGTGAAGAAGCTTGATAAATTCGAAAAGATGATATAA 2202 41.92 MAAILASNSCYCRDVQFVNQGRTTDSLSFSRSVSNQKLDNQHECSLPKSQRFPKFHVKMQQTESPMKYGTNGRPANGQPVKLGANGKPVNLGANGQPVKLGSKGQPITMVSTSDVVNNKPTVGLVNGSAKAVNGTSLVRRETTPPLVKSVKVRESTGFPPSEELRVLPSDESFSWANENYNSVQRSIDVWSFVLSLRVRVLLDNAKWAYPGGFTEDKQKGRRRNTAAWLRERVLQLGPTFIKLGQLSSTRSDLFPREFVDELAKLQDRVPAFSPEKAKGFIEKELGAPVNIIFKEFEERPIAAASLGQVHRAILHNGEKVVVKVQRPGLKKLFDIDLRNLKLVAEYFQRSETLGGPTRDWMGIYDECAKILYQEIDYINEGKNADRFRRDFRNIKWVRVPQVFWDYTATKVLTLEYVPGIKINNVDAIKDRSYSRSRISSRAIESYLIQILKTGFFHADPHPGNLAIDLDESLIYYDFGMMGEIKSFTRERLMDLFYAVYEKDAKKVMNSLVSLEALQPTGDMSPVRRSVQFFLDNLLNQSPDQETTLAAIGEDLFSIATDQPFRFPSTFTFVIRAFSTLEGIGYSLDPDFSFVKIAAPYAQELLDLKEQRPSGTQLVAEMRKQADDARSNTMSMPYRVQRIEEFVKQLEIGDVKLRVRVLESERAAKKATILQMATMYTILGGTLVNIGVTFSTQGSQLIANGSFVAAGVFIALLIRSMQRVKKLDKFEKMI 733
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00928 733 CDD ABC1-ADCK3-like 264 511 - -
Glco3g00928 733 SUPERFAMILY Protein kinase-like (PK-like) 266 512 IPR011009 -
Glco3g00928 733 Pfam ABC1 atypical kinase-like domain 264 510 IPR004147 -
Glco3g00928 733 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 48 665 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00928 K03688 ubiquinone biosynthesis protein
Glco3g00928 K08869 aarF domain-containing kinase
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr1:253919067 Glco3g00928 Glco-Chr3:53279558 dispersed
Glco Glco-Chr3:53279558 Glco6g00468 Glco-Chr6:28573906 dispersed
Glco Glco-Chr3:53279558 Glco6g03496 Glco-Chr6:354622788 transposed