AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01033 ATGGCAGACAAAATAGATAAAAGTGAAGCTGTGACTACACCAAGATCTGAAATGGGACCATGGCTTGATGATGGGAGTTCGAGTATTCGAACTGCTGAGACGCTCTTGAGGTTGTTTCCTGTTGGACTATGTGTGGCTGCACTTGTTGTCATGCTTAAGGATTCTGAGTCTAATGAATATGGTGCTTTATATTACTCCAACATCACTGCTTTCAGGTTTTTGGTGCACGCTAATGGCATATGTGCTGGTTATTCCCTACTATCGGCTGCTTACACCGCAATGCCTCGCCCTATAACCATGCCTCGAGCTTGGACCTTCTTCCTCCTTGACCAGGTCTTAACATACCTCACACTGGCTGCTGGTGCGGTGGCTGCTGAGGTTGCATTTCTGACATACAAAGGAGATATGGCAGTGACATGGAGTGAGGTCTGTGGGACCTACGGCCACTTTTGTAGACAAGCAACCGCGTCAATCATCATCACTTTTATGGTGGTGCTTTGCTACATTCTGTTGTCTCTTATCTCGTCGTATAGGCTCTTCAGCAAGTTTGATGCACCTGTTGGCTACCATATTAACAAGGGGATCGAGATTGTTGACTTTGGAAATTAA 609 45.81 MADKIDKSEAVTTPRSEMGPWLDDGSSSIRTAETLLRLFPVGLCVAALVVMLKDSESNEYGALYYSNITAFRFLVHANGICAGYSLLSAAYTAMPRPITMPRAWTFFLLDQVLTYLTLAAGAVAAEVAFLTYKGDMAVTWSEVCGTYGHFCRQATASIIITFMVVLCYILLSLISSYRLFSKFDAPVGYHINKGIEIVDFGN 202
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01033 202 PANTHER CASP-LIKE PROTEIN 4A4 30 181 - -
Glco3g01033 202 Pfam Casparian strip membrane protein domain 27 167 IPR006702 -
Glco3g01033 202 NCBIfam plant integral membrane protein TIGR01569 36 177 IPR006459 -
Glco3g01033 202 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01033 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:60363197 Glco6g01056 Glco-Chr6:56819328 dispersed