AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01079 ATGGCAACTTGTTCAAACTACACTCATACTTTTAAAAATAGTAACTCAAGAGCCAAATTATTAACATCTTCTAAAGATGTATTTGGTTCATCTTCAGTTTCAGTAACAGTTAGTAAAAAACAGAAAAACCAAACTCGTCAAATTTCGACACGTTCAGCGCTTCAAACGCCCTCAATTCTACAAGTCCCGAAACAAACACCGCGAAAAAGCTCGAAAAGTATCGAATTACCATCTCTAAGTCCATCTCCAAAGGTCCCACAAAACTGGAACTTATTGCAAAAGCTTGCTTCGATCGCATTGGACGCGATCGAAGACCGAATAAAAGATGGTGAAAGGTCACACCCTTTACCGAAAACTGTCGACCCAGATGTTCAGATCGCCGGAAATTTCTCTCCGGTGCCGGAGCAGCCAGTGAGGCATTCTTTACCGGTGGCTGGAAAAATCCCGGAGCATTTTAACGGTGTTTATTTACGTAACGGAGCAAACCCTTTGTTTGAACCAACTGCTGGGCATCATTTGTTTGATGGAGATGGTATGATATATGCTGTGAGTTTCGATAATGGGTCGGCGAGTTACGCGTGCAGACACACGGAAACTCACCGACTCGTACAAGAACGCGCTATCGGAAAGCCGGTTTTCCCCAAAGCTATCGGGGAACTACACGGACATTCCGGTATCGCGAAATTGTTGCTGTTTTACGCACGTGGATTGTGCGGGTTAGTTGATCATAATAATGGCATTGGCGTAGCTAACGCCGGTTTAGTTTATTTTAACAACCGGCTGTTAGCTATGTCCGAAGATGATTTACCTTATCATGTACGAGTTACGCCTTCTGGCGATTTGAAAACCGCGGGAAGGTATAACTTTGGTGGACAGCTGGAGTCCACTATGATAGCTCACCCGAAACTCGACCCAGTTTCGGGTGAACTGTTTGCATTAAGTTATGACGTTATTAAAAAGCCATACTTGAAATATTTTCGGTTTTCACCTGATGGGAAGAAGTCAGAAGACGTGGAGATTGATTTGGAGAAGCCGACAATGGTTCATGATTTCGCGATAACTGAAAACTACGTGGTGGTCCCAGACCATCAAGTAGTTTTCAAGATGTCGGAAATGGTTACAGGCGGGTCGCCCGTTATATACGACAAAGAAAAAGTGTCGCGGTTTGGTGTTTTGGACAAATATGCCAAGAACGGCTCAGAGATTAAATGGGTCGAAGTTCCGGATTGCTTTTGTTTTCATTTGTGGAATGCGTGGGAAGAGCCCGAGTCGGATGAAGTTGTGGTAATCGGGTCGTGTATGACTCCAGCTGACTCGATTTTTAACGAATGTAACGAAGAGTTAAAAAGTGTTTTATCAGAAATTCGACTCAACTTGAAAACCGGTAAATCAACTCGCCGAGCAATCATTTCTCCAGAGAACGATGTTAACTTAGAAGCTGGAATGGTGAACAAAAATCTTTTAGGCCGAAAGAGTAAATACGCTTACCTAGCGATTGCTGAACCATGGCCTAAAGTGTCGGGTTTTGCTAAAGTTGATCTTTCAACAGGGGAGATTAAGAAGTTTATTTATGGAGACGAAAAGTATGGTGGCGAGCCGTTGTATCTACCTAGAGACAACGCTACTGACGAAGACGATGGTCATATTTTGGCCTTTGTGCACGACGAAAAAGCATGGAAGTCCGAGCTCCAGATTGTGAATGCAAAGACAATGGAATTAGAGGCGACAGTTATGTTACCATCAAGGGTTCCTTATGGTTTTCATGGAACATTTATTCCAGCCCGTGATTTAGCATCCCAGGCGTGA 1806 43.58 MATCSNYTHTFKNSNSRAKLLTSSKDVFGSSSVSVTVSKKQKNQTRQISTRSALQTPSILQVPKQTPRKSSKSIELPSLSPSPKVPQNWNLLQKLASIALDAIEDRIKDGERSHPLPKTVDPDVQIAGNFSPVPEQPVRHSLPVAGKIPEHFNGVYLRNGANPLFEPTAGHHLFDGDGMIYAVSFDNGSASYACRHTETHRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGLVDHNNGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFGGQLESTMIAHPKLDPVSGELFALSYDVIKKPYLKYFRFSPDGKKSEDVEIDLEKPTMVHDFAITENYVVVPDHQVVFKMSEMVTGGSPVIYDKEKVSRFGVLDKYAKNGSEIKWVEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRRAIISPENDVNLEAGMVNKNLLGRKSKYAYLAIAEPWPKVSGFAKVDLSTGEIKKFIYGDEKYGGEPLYLPRDNATDEDDGHILAFVHDEKAWKSELQIVNAKTMELEATVMLPSRVPYGFHGTFIPARDLASQA 601
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01079 601 Pfam Retinal pigment epithelial membrane protein 135 593 IPR004294 GO:0016702(InterPro)
Glco3g01079 601 MobiDBLite consensus disorder prediction 36 82 - -
Glco3g01079 601 PANTHER BETA-CAROTENE DIOXYGENASE 114 593 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01079 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Event-related genes

Select Gene_1 Gene_2 Event_name
99470 Glco3g01079 Glco7g06847
99471 Glco3g01079 Glco9g03584
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:64532962 Glco8g05359 Glco-Chr8:473448137 dispersed
Glco Glco-Chr2:598828266 Glco3g01079 Glco-Chr3:64532962 transposed
Glco Glco-Chr3:53102601 Glco3g01079 Glco-Chr3:64532962 transposed
Glco Glco-Chr3:636951801 Glco3g01079 Glco-Chr3:64532962 transposed
Glco Glco-Chr4:138976953 Glco3g01079 Glco-Chr3:64532962 transposed
Glco Glco-Chr4:300906615 Glco3g01079 Glco-Chr3:64532962 transposed
Glco Glco-Chr9:470822124 Glco3g01079 Glco-Chr3:64532962 transposed
Glco Glco-Chr3:64532962 Glco7g06847 Glco-Chr7:575864487 wgd
Glco Glco-Chr3:64532962 Glco9g03584 Glco-Chr9:470820736 wgd