AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01205 ATGACGGAAATCAAACATTCCCTTATTTATCTCTTATTTTTCACCTTTTTTTTCTTTCAACCTCAAGCTCAAGCTGCTGCTCCGGTGATTAAGCAGTTATCTTCTATACTAAAGTGGACTGCTACTCGGTCTTCTTCTAAATCTGCTGCTGTTTCTGATGGGAATATTCTTCAATTTGAGGAAGGGTATCTAGTAGAAACTGTTGTTGAAGGGAATCAGCTAGGGGTTGTGCCTTATTCTATTCGAGTTTCACAGGAAGGTGAACTATATGCCGTCGATTCAGTAAATAGCAACATTGTTCGAATCACACCGCCTTTGTCTCAATATAGTAGGGCAAGATTGATTGCCGGGTCATTCCAAGGTTATACTGGACATGTAGATGGAAAACCAAATGATGCCCGTTTTGATCATCCCAAAGGGGTTACTATGGATGATAAAGGAAATGTTTATGTTGCTGATACCTCTAATCTTGCCATCAGAAAAATCGGTGAAACAGGTGTGACTACAATTGCTGGAGGAAAATCAAATGTAGCAGGGTATAGGGACGGTCCAAGTGAGGATGCACAGTTCTCGACTGATTTTGATATAATATATGTGAGGCCAACCTGTTCATTGCTTGTTATTGACCGGGGCAATGCTGCTCTTCGACAAATTGCTCTCAATCAAGAGGATTGTGATTTCCTTGATACCTCTGTCTCGTCCTCAGATCTCATTCTGGTGGTCAGTGCCATCTTGATAGGATACGTTTTGTGCATAGTTCAACAAGGATACGGGTCATCATATTTCACAAAAGTGCAGGATAAGGTGGAGAGTGACACTAAACAACCAATCAAGGAAAACTCTCTTAAAACTCATACTGTGGAAACTGTTAAAGAGGAACAAGAAGCGGGATGGCCATCTTTCGGGCAACTCGTTATGGACCTCTCAAAGCTTGCTATTGAAGCCTTTGGTAACATATTCGTGTCTTTTAACCCCTTCAACATCGGTCCTAAAAGAGGCCTCACTCCATTAAAAGACCGTCTCATAATGCCTGAAGACGAGCCTGCTAACCAGCCTCCGTTAGTTAAAAAACACAGGACTCCAACTCCTCTCTCAGAAACCCGTCATGCCCACAACCCAAACGAAAATTACCCTGAAACAAAGCCTGCTAAGGTCAGGTCATCTTCAAAAGACCCAAGCAAACACCGGGTCTCAAAACGAGAAGAATATGCAGAGTTTTATGGAGCTAGTGGCGAGGTCCCTCATGTTCGGTCAAAAAGCCAGAAGGAAAGAACCAAGCTTCGGCCTAGGGAGAAACGAGCTGAAGTTGTGTATGGAGAGCAAAAACCTAGGGAGAAACGAGCTGAAGTTGTGTATGGAGAACAAAAACCAGTTGACCCAAAGCCTGTCAACTATGAGGATTCTAAGTTTAGTTATATGAGAAATAAGTATGGTGATTCATATCGTTAA 1449 42.37 MTEIKHSLIYLLFFTFFFFQPQAQAAAPVIKQLSSILKWTATRSSSKSAAVSDGNILQFEEGYLVETVVEGNQLGVVPYSIRVSQEGELYAVDSVNSNIVRITPPLSQYSRARLIAGSFQGYTGHVDGKPNDARFDHPKGVTMDDKGNVYVADTSNLAIRKIGETGVTTIAGGKSNVAGYRDGPSEDAQFSTDFDIIYVRPTCSLLVIDRGNAALRQIALNQEDCDFLDTSVSSSDLILVVSAILIGYVLCIVQQGYGSSYFTKVQDKVESDTKQPIKENSLKTHTVETVKEEQEAGWPSFGQLVMDLSKLAIEAFGNIFVSFNPFNIGPKRGLTPLKDRLIMPEDEPANQPPLVKKHRTPTPLSETRHAHNPNENYPETKPAKVRSSSKDPSKHRVSKREEYAEFYGASGEVPHVRSKSQKERTKLRPREKRAEVVYGEQKPREKRAEVVYGEQKPVDPKPVNYEDSKFSYMRNKYGDSYR 482
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01205 482 SUPERFAMILY NHL repeat 75 210 - -
Glco3g01205 482 MobiDBLite consensus disorder prediction 416 454 - -
Glco3g01205 482 MobiDBLite consensus disorder prediction 384 406 - -
Glco3g01205 482 Gene3D - 15 220 IPR011042 -
Glco3g01205 482 Pfam NHL repeat 135 161 IPR001258 GO:0005515(InterPro)
Glco3g01205 482 PANTHER - 16 478 - -
Glco3g01205 482 MobiDBLite consensus disorder prediction 344 466 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01205 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr2:440105828 Glco3g01205 Glco-Chr3:74132168 dispersed
Glco Glco-Chr3:74132168 Glco7g03298 Glco-Chr7:415323297 transposed