AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01272 ATGACTGGAGTGTCATTGGATATTAGAACACAGAGTTATGGATCACCACAGCAGCCGCCGAATGGTTCATTGCAAACTCAAAATGGGTTCATGGTACGCAAGTCTTCGAGGATGTCATTGTCTGGTTCGAGAGAGAAGGATAGGTTTCTTACATTTTTGTGCAGATATTTAAGTAGAAAGAAGGTTGTAATGATGATTTTAGTTTCATTTGCTCTCATGGCTTTCTTGTCGGGCTTCTTTACCTCCAATAGAGAAGTTGCATCAGAGCGCACGATCTTCAATCCTTTTAACGAGGCATTCAATACCTCTCTTCAGTTTGCTAGATTTGGTAATCAGAGATACGATAATTCTTCTATGCAGACAACTCTGTCTGTATGTGAAGTGAACCCCCCTATTCGTCGTTATTCGGATGCATCGCTTTCTACAGGATCCGTTATTCCTCATAGCAATTTGTGTAAGAATTTTGCATTTCCTCCTCCTCCTCCAGGTGATAGGAGACGACCTGGACCTCGACCTTGTCCTGTATGTTACCTTCCAGTGGAGGAGGCTATGGCTAGCATGCCGAACTCACCATCACCATCACCTGTGCTTAATGACTTGAGTTATTTTCATGAGGCGACTTCTACTAAAACTGAACAACATGAAGGCTCTGACTTTGGTGGGTATCCTTCCTTAAAGCAAAGGAATGAATCTTTTGATATTAAAGAATCCATGACTGTGCATTGTGGATTTGTAAAAGGATGTAGGCCTGGTTATCAAACTGGATTTGATATTGATGTATCTGATCTCGTGGAGTTGGAGCAGTATCATGACATCATTGTTGCATCAGCCATATTTGGAAACTATGATGTAATTCAACAGCCAACTAAAATTAGCGAGGGTGCAAGTAGAGACATTCCTTTTTATATGTTTATTGACGAAGAGACTGAAGCATATATGAGAAACACTAGTGCTTTGGACTACAGAATGAAGGTTGGATTGTGGAGAATTATTGTTGTGCGTAACATACCTTACACCGATTCGAGACGCAATGGAAAGGTCCCCAAGCTTCTACTACACAGACTCTTTCCAAATGTTCGGTATTCTATATGGATTGACGGGAAGCTGCAACTCGTTGTGGACCCATATCAACTTCTAGAGAGGTTCTTGTGGCGCCACAATGCTACTTTTGCAATTTCAAAACACTATAGGCGATTTGATGTGTTTGAAGAAGCTGAAGCTAATAAGGCTGCCGGGAAATACGACAATTCATCCATTGATTACCAGATTGATTTTTACAGAAATGAGGGTTTAACACCTTATTCTGAGGCTAAGCTTCCTCTAATCAGTGATGTTCCTGAAGGGTGTGTCATCATTAGGGAGCACATTCCGATAACAAATCTCTTCACGTGCTTGTGGTTCAATGAAGTTGACCGCTTTACTTCAAGGGATCAATTAAGTTTTGCTATTGTAAGGGACAAAATTATGGCTCAAGTCGATTGGAGCATCAATATGTTCATGGATTGTGAAAGACGGAACTTTGTGATACAGGCATACCACCGGGATCTACTTGAGCATATGCCACCTCCTGCACCACCTAAAGTGAGCAATTTAAGGCGTATCCGAGCTCCTATTCCTGTTCCTGTATCCGTGCGAGTTAATTCACCTGTTAAATATCCAGCAAAGAAAAACCCTGTTCGACGGAAAGGTGAAAGAAGACCTCGTTCAAGGAGGCATCCAAAAAATCCCAGTAATAGGGACAACACGTTCTTTTGA 1755 41.6 MTGVSLDIRTQSYGSPQQPPNGSLQTQNGFMVRKSSRMSLSGSREKDRFLTFLCRYLSRKKVVMMILVSFALMAFLSGFFTSNREVASERTIFNPFNEAFNTSLQFARFGNQRYDNSSMQTTLSVCEVNPPIRRYSDASLSTGSVIPHSNLCKNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAMASMPNSPSPSPVLNDLSYFHEATSTKTEQHEGSDFGGYPSLKQRNESFDIKESMTVHCGFVKGCRPGYQTGFDIDVSDLVELEQYHDIIVASAIFGNYDVIQQPTKISEGASRDIPFYMFIDEETEAYMRNTSALDYRMKVGLWRIIVVRNIPYTDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRHNATFAISKHYRRFDVFEEAEANKAAGKYDNSSIDYQIDFYRNEGLTPYSEAKLPLISDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFAIVRDKIMAQVDWSINMFMDCERRNFVIQAYHRDLLEHMPPPAPPKVSNLRRIRAPIPVPVSVRVNSPVKYPAKKNPVRRKGERRPRSRRHPKNPSNRDNTFF 584
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01272 584 PANTHER ALKALINE CERAMIDASE-RELATED 36 533 IPR006852 -
Glco3g01272 584 MobiDBLite consensus disorder prediction 551 584 - -
Glco3g01272 584 MobiDBLite consensus disorder prediction 1 28 - -
Glco3g01272 584 Pfam TOD1-MUCI70, glycosyltransferase-like domain 200 513 IPR048354 -
Glco3g01272 584 MobiDBLite consensus disorder prediction 555 573 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01272 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:79297591 Glco8g04395 Glco-Chr8:385609441 dispersed
Glco Glco-Chr3:79297591 Glco3g06952 Glco-Chr3:654697046 transposed