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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01359 ATGGCAGCAGTCTCATTTTCCTTTTCACACACATTTCTACATGCACTATGTGTACTATCACTTCTTTCATTAACACACTCACATTCAGTAACAGAATCATCTCTCCATGAACTCTTGAAATCAAAAGGCTTACCAGTCGGCTTATTCCCCAAGGAAGTCGAATCATTCACATTATACGACACAGGTTTACTAGAGGTTTTCTTACGTGGACCATGTCTAACAAAGTTCGATACGATGGCATTTTACGAAAGTACGGTTAGAGCCAATCTAACGTACGGGAGTTTGACAAGTGTTGAAGGGCTGTCACAAGAAGAATTATTCCTATGGTTGCCTGTTAAGGATATCATTGTTGATGATCCTAAATCTGGGCTTATTTTGTTTGATATTGGATTAGCTCATAAACAGCTCTCTTTGTCTTTGTTTGAAGACCCTCCAGATTGTAAATCAGAAGATGTTTTGAATTTGAAGAAGAGATCTAGAAAGGAGATCGGATTTGATGCTCAAATGTAG 510 38.24 MAAVSFSFSHTFLHALCVLSLLSLTHSHSVTESSLHELLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTVRANLTYGSLTSVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAHKQLSLSLFEDPPDCKSEDVLNLKKRSRKEIGFDAQM 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01359 169 Pfam Protein of unknown function, DUF538 36 142 IPR007493 -
Glco3g01359 169 SUPERFAMILY At5g01610-like 11 149 IPR036758 -
Glco3g01359 169 Gene3D - 22 152 IPR036758 -
Glco3g01359 169 FunFam Uncharacterized protein At3g07460 22 151 - -
Glco3g01359 169 PANTHER T31J12.3 PROTEIN-RELATED 23 148 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01359 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3106885 Glco Glco3g01359 Glco-Chr3:86998384 Glco5g06968 Glco-Chr5:596875654
3164382 Glco Glco3g01359 Glco-Chr3:86998384 Glco6g04771 Glco-Chr6:518503828