AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01454 ATGAAGGCTCTGTTGACTCGTAATTTAGCTTCATCGTTAAATCGTCACATATCATCATCAATTCGTCGCAATAGTTTTAGTTTAAGCAAATTTAGGTTTTTTTCTGCTGCCGTTGATTGTGTGAAAAGAAGTATGGGGTCGCAAGTGGAGGAGATCGAGTGGCCTGCTAATAAAGTTAGAGATACTTTTATTAAGTTTTTCGAGGAACGGAATCATGTTTACTGGAAATCTAGTCCCGTTGTTCCTGTTAATGATCCTACTCTTTTGTTCGCTAATGCCGGTATGAATCAGTATAAGCCCATCTTCTTGGGTACTGCTGATCCAAATACTTCTTTGAGCAAATTGACTCGCGCTTGCAACACCCAGAAGTGTATCCGAGCAGGCGGAAAGCATAATGATCTTGATGATGTTGGCAAAGATACTTATCATCACACGTTCTTTGAAATGCTCGGTAACTGGTCATTTGGTGATTATTTTAAGAAGGAAGCTATTGGATGGGCATGGGAGCTTCTCACAAGTGTTTATAAGCTGCCATCTGATCGAATATATGCTACTTACTTCGGTGGTGATGAGAAATTGGGTCTTCCCGCTGATAATGAAGCTAGAGATCTATGGCTTCAATACCTCCCACCTGCACGAGTTTTGCCTTTTGGTTGTAAAGACAACTTTTGGGAGATGGGTGATACTGGGCCATGCGGACCATGTACCGAAATTCACTTTGATAGAATTGGTGGTCGCGATGGTGCACATTTGGTTAACAACGATGACCCTACATTGATTGAAATCTGGAATAACGTGTTCATTCAGTTTAACAGGGAAGCTGATGGTTCTTTGAAACCTCTCCCTGCCAAGCACGTAGATACTGGAATGGGTTTCGAAAGATTGACATCTATTCTTCAGAACAAGTTGAGCAACTATGATACTGATGTCTTTCTACCTATTTTTGATGCTATTCAAGAGGCAACTAAGGCCAGAGCGTATACAGGCAAAGTGGGGCCAGATGACAAGGATGGCGTTGACATGGCATACAGAGTTGTTGCTGATCACATCCGAACTCTTTCATTTGCCATAGCCGATGGCTCTTGTCCAGGCAATGAAGGGCGTGAATATGTTTTACGGCGCATTCTTCGACGCGCAGTACGTTATGGAAGACAAGTTTTAAACGCGAAGCCAGGATTTTTTAACGGATTGGTAAAAGTTGTGGTCGATGTCATGAGCCATGTCTTTCCTGAGCTAAAGCAACATGAGACACGCATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACGTTAGTTCATGGAATTGAGAAGTTTAAAAGGATAGCTCAAGATAATCAGGGAAAAATTATTAGTGGACAGGATGCATTTGTGTTGTGGGATACTTTTGGATTTCCATTGGATTTAACTCAGGTAATGGCAGAAGAAATACATTTAGTGGTTGATGTCGAGGGTTTTAATCTCGCTATGAGTGAAGCTAGAGAAAGATCAAGGAATGCTCAGAATAAGCAATCTGCTGTTTCGATTGTGATGGATGCAGATGCGACCTCAACACTACATAAGAGAGGGGTGGCTACAACGAATGATAGTTTCAAATTTAAGTTGTTTGAGGACCACAAAAGTGTGATAAAAGGCATTTACACGGGTAGTGAGTATGTGGAACATGCTGAGGCTGGTGTTGATGTGGGTATAATTCTTGAGAGCACAAGTTTCTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGAAGGCCCCTCTGGATTATTCGAGGTTTCTAATGTTCAAGTTTACGGTGGTTTTGTGATTCATCTTGGTCAAATTACTGGAGAATCTACAAAGTTCCATGTTGGCGATGAAGTAAGCTGCCAGGTTGATTATGGAAGGCGTCAACGCATCGCTCCCAACCATACCTGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGGACCACATCGACCAAAAAGGATCCATTGTTCTCCCAGAAAAATTAAGATTTGACTTTTCCCATGGGAAGCCTGTAACGACAAAGGACATTCGCAGAATTGAATCCATTGTAAATGAACAAATAAAAGCTGAATTAGAGGTTTCTGCAAAGGAGGCTAGCCTTGCTGATGCAAAACGAGTGAATGGATTGCGTGCTGTTTTTGGTGAAGTGTATCCTGATCCAGTTAGAATTGTCTCAATTGGTCGAAAAGTGGATGAACTATTGGCCGATCCTGAAAATAAAGAATGGGCATCCATATCTGCAGAGCTCTGTGGAGGGACTCATATATCCAATACACGAGAGGCTAGGGCATTTGCACTTCTGTCCGAGGAGGGAATTGCCAAGGGGGTCCGAAGAGTTACAGCAGTAACAACAGAATATGCTTTCGAGGCTTTTAAAAAAGCAGCTGAACTTGAACAAGAAGTTGCTCATGCAAAAACTTTGGAAGGAAACCTTCTTGAGCAGAAAGTCACCTCTTTAAATGGTCAAGTAGAGTCTGCAGCCATTCCAACAGCAAAGAAGTTCGATCTTAAGGAAGAACTTGGCACTCTTCAGACTCGAGTAATAAGCAACAAAAAGAGGATTGCTGAAGAAAACATCCGGAATGCTGTTGCATCCGTCACTGCAGCAGCAGAAGCTGCCATTGCTGAGGGAAAGACTTTCTGCATTTCCCGTGTTGATGTAGGATCTGATACTGCTGCTATTCGCGAGGCAGCTGTTAAAGTCAAAGAAGAACAGGGTTTGCCCGTGATGGTTTTTAGCACTGATGAACAATCCAAGAAGGCGTATGTTTGTGCGGGTGTGCCTGAGCAAATCAAACTGAAGGTTGTAGAGTGGCTGAAGGAAGCATTAATTCCGTTAGAAGGCAAAGGTGGTGGTGGGAAAGGCGGTCTTGCGCAAGGCCAGGGACCCAAGATAACGTGTGTGGATGATGCAATTGAACTCGCCAAGTCATTTGCGTCACTCAAGCTGGGTTAA 2985 42.88 MKALLTRNLASSLNRHISSSIRRNSFSLSKFRFFSAAVDCVKRSMGSQVEEIEWPANKVRDTFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTSVYKLPSDRIYATYFGGDEKLGLPADNEARDLWLQYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDGAHLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKLSNYDTDVFLPIFDAIQEATKARAYTGKVGPDDKDGVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGRQVLNAKPGFFNGLVKVVVDVMSHVFPELKQHETRIREIIAEEEASFGRTLVHGIEKFKRIAQDNQGKIISGQDAFVLWDTFGFPLDLTQVMAEEIHLVVDVEGFNLAMSEARERSRNAQNKQSAVSIVMDADATSTLHKRGVATTNDSFKFKLFEDHKSVIKGIYTGSEYVEHAEAGVDVGIILESTSFYAEQGGQIFDTGLLEGPSGLFEVSNVQVYGGFVIHLGQITGESTKFHVGDEVSCQVDYGRRQRIAPNHTCTHMLNFALREVLGDHIDQKGSIVLPEKLRFDFSHGKPVTTKDIRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVSIGRKVDELLADPENKEWASISAELCGGTHISNTREARAFALLSEEGIAKGVRRVTAVTTEYAFEAFKKAAELEQEVAHAKTLEGNLLEQKVTSLNGQVESAAIPTAKKFDLKEELGTLQTRVISNKKRIAEENIRNAVASVTAAAEAAIAEGKTFCISRVDVGSDTAAIREAAVKVKEEQGLPVMVFSTDEQSKKAYVCAGVPEQIKLKVVEWLKEALIPLEGKGGGGKGGLAQGQGPKITCVDDAIELAKSFASLKLG 994
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01454 994 NCBIfam alanine--tRNA ligase 58 972 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Glco3g01454 994 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 307 511 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Glco3g01454 994 Gene3D - 630 806 - -
Glco3g01454 994 Coils Coil 485 505 - -
Glco3g01454 994 Pfam DHHA1 domain 853 988 IPR003156 GO:0003676(InterPro)
Glco3g01454 994 SUPERFAMILY ThrRS-AlaRS common domain 629 801 IPR018163 GO:0000166(InterPro)
Glco3g01454 994 Gene3D - 882 989 - -
Glco3g01454 994 FunFam Alanine--tRNA ligase 528 628 - -
Glco3g01454 994 Pfam tRNA synthetases class II (A) 58 631 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Glco3g01454 994 Gene3D Bira Bifunctional Protein; Domain 2 55 303 IPR045864 -
Glco3g01454 994 SUPERFAMILY Class II aaRS and biotin synthetases 55 306 IPR045864 -
Glco3g01454 994 Coils Coil 804 824 - -
Glco3g01454 994 FunFam Alanine--tRNA ligase, cytoplasmic 630 805 - -
Glco3g01454 994 PANTHER ALANYL-TRNA SYNTHETASE 45 990 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Glco3g01454 994 FunFam Alanine--tRNA ligase, cytoplasmic 53 303 - -
Glco3g01454 994 CDD AlaRS-core 56 302 - -
Glco3g01454 994 Gene3D - 529 629 - -
Glco3g01454 994 PRINTS Alanyl-tRNA synthetase signature 368 381 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Glco3g01454 994 PRINTS Alanyl-tRNA synthetase signature 287 300 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Glco3g01454 994 PRINTS Alanyl-tRNA synthetase signature 344 360 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Glco3g01454 994 PRINTS Alanyl-tRNA synthetase signature 260 271 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Glco3g01454 994 PRINTS Alanyl-tRNA synthetase signature 132 143 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Glco3g01454 994 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 54 803 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Glco3g01454 994 SMART tRNA-SAD-4 731 790 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Glco3g01454 994 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 731 789 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Glco3g01454 994 Hamap Alanine--tRNA ligase [alaS]. 54 993 IPR023033 GO:0004813(InterPro)
Glco3g01454 994 SUPERFAMILY Translation proteins 559 629 IPR009000 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01454 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3106965 Glco Glco3g01454 Glco-Chr3:94466351 Glco8g04941 Glco-Chr8:440457039