AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glco3g01613 | ATGAAAGACAACGGAGGTAGTGGTGGTGCCGGCCGAAAACAAGGGGCCGCGTCACCATGTGCGGCGTGCAAGCTTTTGCGCCGTAGATGCTCTCAAGATTGTGTTTTTGCTCCCTACTTCCCTGCTGATGAGCCACACAAGTTTGCTAGTGTTCATAAAGTATTTGGCGCTAGCAATGTCAACAAGATGCTCCAGGAATTACCGGAGCATCATAGAGGCGATGCAGTGAGTTCAATGGTTTATGAAGCAAATGCTAGGATCAGGGATCCTGTTTATGGTTGTGTGGGCGCTATATCGTCCCTACAACAACAAATAGATGTACTTCAAGCACAACTAGCACTGTCACAAGCCGAAGTGGTTCACATGAGAATGCGCCAATACTCTACTAGTCCTGTCAACCATTCACCGGAGAATCACTCACCACCATCTCCACCAGACAACAACCATTTTTGGTATGAACATGGAGGTTAA | 471 | 47.56 | MKDNGGSGGAGRKQGAASPCAACKLLRRRCSQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHHRGDAVSSMVYEANARIRDPVYGCVGAISSLQQQIDVLQAQLALSQAEVVHMRMRQYSTSPVNHSPENHSPPSPPDNNHFWYEHGG | 156 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glco3g01613 | 156 | Pfam | Lateral organ boundaries (LOB) domain | 19 | 116 | IPR004883 | - | |
| Glco3g01613 | 156 | Coils | Coil | 98 | 118 | - | - | |
| Glco3g01613 | 156 | MobiDBLite | consensus disorder prediction | 128 | 148 | - | - | |
| Glco3g01613 | 156 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 131 | - | - | |
| Glco3g01613 | 156 | ProSiteProfiles | LOB domain profile. | 18 | 119 | IPR004883 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Glco3g01613 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Glco | Glco-Chr1:509167760 | Glco3g01613 | Glco-Chr3:105180787 | dispersed | |
| Glco | Glco-Chr3:105180787 | Glco6g04471 | Glco-Chr6:498813846 | dispersed | |
| Glco | Glco-Chr3:105180787 | Glco2g03857 | Glco-Chr2:502016162 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Glco1g05513 | ACH | 10 | 245 | AS2 family | AT2G42430 | 50.202 | 4.64e-66 | 201.0 | |
| Glco1g05517 | ACH | 1 | 243 | AS2 family | AT2G42440 | 50.201 | 1.61e-66 | 203.0 | |
| Glco2g00442 | . | 3 | 199 | AS2 family | AT1G65620 | 64.758 | 3.67e-80 | 236.0 | |
| Glco2g02021 | . | 1 | 124 | AS2 family | AT5G06080 | 64.516 | 7.02e-54 | 167.0 | |
| Glco2g03495 | . | 1 | 113 | AS2 family | AT3G26660 | 57.522 | 3.81e-47 | 147.0 | |
| Glco2g03857 | . | 2 | 247 | AS2 family | AT5G66870 | 50.0 | 9.15e-75 | 231.0 | |
| Glco2g04906 | ACH | 1 | 106 | AS2 family | AT4G37540 | 66.981 | 1.97e-49 | 158.0 | |
| Glco3g00662 | ACH | 1 | 115 | AS2 family | AT5G67420 | 74.783 | 9.68e-64 | 194.0 | |
| Glco3g01613 | . | 4 | 125 | AS2 family | AT1G31320 | 86.066 | 1.80e-68 | 203.0 | |
| Glco4g01258 | . | 1 | 107 | AS2 family | AT3G26660 | 62.617 | 9.52e-51 | 156.0 | |
| Glco4g02056 | ACH | 50 | 161 | AS2 family | AT3G03760 | 66.071 | 2.18e-47 | 156.0 | |
| Glco4g04605 | ACH | 27 | 327 | AS2 family | AT3G47870 | 40.129 | 8.57e-59 | 189.0 | |
| Glco4g05426 | ACH | 1 | 110 | AS2 family | AT5G67420 | 69.369 | 4.42e-55 | 172.0 | |
| Glco4g06414 | . | 1 | 114 | AS2 family | AT5G63090 | 79.825 | 6.73e-65 | 196.0 | |
| Glco4g06415 | . | 1 | 124 | AS2 family | AT5G63090 | 75.0 | 2.97e-65 | 196.0 | |
| Glco4g07011 | ACH | 35 | 246 | AS2 family | AT3G13850 | 47.303 | 8.58e-60 | 191.0 | |
| Glco5g02721 | . | 20 | 172 | AS2 family | AT4G00220 | 68.387 | 1.18e-67 | 207.0 | |
| Glco5g06091 | ACH | 51 | 247 | AS2 family | AT3G03760 | 59.701 | 1.90e-67 | 207.0 | |
| Glco6g01584 | . | 1 | 124 | AS2 family | AT5G63090 | 88.71 | 1.28e-77 | 228.0 | |
| Glco6g01698 | ACH | 27 | 140 | AS2 family | AT3G47870 | 56.522 | 7.40e-40 | 138.0 | |
| Glco6g04471 | . | 3 | 193 | AS2 family | AT2G30130 | 68.394 | 2.88e-86 | 249.0 | |
| Glco6g05147 | ACH | 11 | 215 | AS2 family | AT3G58190 | 50.228 | 5.16e-66 | 201.0 | |
| Glco6g05148 | ACH | 8 | 245 | AS2 family | AT2G42430 | 56.723 | 4.00e-81 | 240.0 | |
| Glco7g01361 | . | 1 | 288 | AS2 family | AT5G66870 | 51.961 | 3.45e-80 | 244.0 | |
| Glco7g01971 | . | 33 | 144 | AS2 family | AT3G27650 | 79.464 | 3.21e-66 | 197.0 | |
| Glco7g03276 | . | 36 | 138 | AS2 family | AT3G13850 | 51.923 | 3.39e-32 | 113.0 | |
| Glco8g01726 | . | 1 | 117 | AS2 family | AT3G49940 | 82.906 | 2.51e-72 | 217.0 | |
| Glco8g01884 | . | 3 | 258 | AS2 family | AT5G66870 | 50.385 | 1.37e-77 | 235.0 | |
| Glco8g05789 | . | 24 | 119 | AS2 family | AT1G06280 | 58.333 | 5.68e-39 | 132.0 | |
| Glco9g03243 | ACH | 1 | 145 | AS2 family | AT3G49940 | 66.897 | 6.42e-67 | 203.0 | |
| Glco9g04325 | . | 36 | 154 | AS2 family | AT3G13850 | 47.107 | 1.43e-32 | 114.0 | |
| Glco9g04329 | . | 36 | 154 | AS2 family | AT3G13850 | 46.281 | 1.71e-32 | 114.0 | |
| Glco9g04330 | . | 36 | 138 | AS2 family | AT3G13850 | 50.962 | 1.90e-32 | 114.0 | |
| Glco9g04331 | . | 36 | 165 | AS2 family | AT3G13850 | 40.152 | 1.48e-30 | 113.0 | |
| Glco9g04336 | ACH | 35 | 248 | AS2 family | AT3G13850 | 44.907 | 2.76e-52 | 168.0 | |
| Glco9g04393 | . | 36 | 138 | AS2 family | AT3G13850 | 41.121 | 7.79e-25 | 94.7 | |
| Glco10000322.1g00073 | . | 3 | 117 | AS2 family | AT2G30130 | 89.565 | 1.85e-74 | 220.0 | |
| Glco10000511.1g00013 | . | 85 | 132 | AS2 family | AT3G47870 | 45.833 | 1.25e-06 | 45.4 | |
| Glco10000996.1g00010 | . | 40 | 244 | AS2 family | AT2G45420 | 60.68 | 3.25e-78 | 234.0 | |
| Glco10000996.1g00013 | . | 2 | 218 | AS2 family | AT4G00210 | 47.706 | 4.55e-58 | 180.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Glco | LOB | 1.6e-43 | No_clan | TF | LOB |