AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01743 ATGGCGAGAATCCCATGGGATTCGTATGCCGATAATGTAAAATGGGCAAAACATTATTGTTCGGATCATCAGATATTGTTAGTTGGAGAAGGGGATTTCTCATTTTCTTGTAGTTTGGCTATTTCTTTTGGCAATGCTTCCAACATTGTTGCCACTTCTCTTGACTCTTATGATGATGTGATCAAGAAGTACAAGAGAGCAAAAGCAAACTTGGAAATTTTGTATAGATTTGGAGCACAGTTATTACATGGCGTTGATGCAATGAAAATGAAGCTTCATACTGATCTACGAATGAGAAAGTTTGACCGCATTGTTTACAACTTTCCACATGCTGGTTTTCTTGGGAAAGAAGATGATAATCGTGTTATTACGCTGCATAAAAATCTGGTGTGTGCTTTCTTCAAGAACGCAAGTAGAATGTTGCGTCAATACGGTGAAGTTCATGTATCCCACAAAACATCAAACCCTTTTGACTTATGGAATATTGAAGAACTCGCTTCTCAAAGCTCTTTGTCATTGTTTGAACGTGTGAAATTTGAAATTGAAGATTATCCTGGTTACAATAACAAAAGAGGAGAAGGTATAAGATCAGACAGCCCATTTCCTTTAGGAGAGTGCTGTACTTTCAAATTCATATTATATTCGAAATCCAACAAATCAATTGGCTCAGATCCTAAAAGTTCTCAAGAACCCCAAATGAGTTCATCAGAGAGTGTGTACCCAAATATCGTTATGAATCATGCTCCTATTGTGAACAACAATCAATGCTATCGGGTTTCTAGGGAGTATTTTGATCATGCACTTTTGACTTATGGGCAAACTGATGACTATATTTTTCATTCTGTTCCACATATGTTGAGCACTGGGTTTGAAAGATGCAGTGCTGAAAGTCATGTAAATCCCTTGACTGATTACATAAGTCATTTGAAAGAGCTTCAATATATATGTAAGCAGAGCATAGCATATTTGCAGAACCGTTTATTGGAAATAGATCAACCGTATTTGTAG 1008 36.71 MARIPWDSYADNVKWAKHYCSDHQILLVGEGDFSFSCSLAISFGNASNIVATSLDSYDDVIKKYKRAKANLEILYRFGAQLLHGVDAMKMKLHTDLRMRKFDRIVYNFPHAGFLGKEDDNRVITLHKNLVCAFFKNASRMLRQYGEVHVSHKTSNPFDLWNIEELASQSSLSLFERVKFEIEDYPGYNNKRGEGIRSDSPFPLGECCTFKFILYSKSNKSIGSDPKSSQEPQMSSSESVYPNIVMNHAPIVNNNQCYRVSREYFDHALLTYGQTDDYIFHSVPHMLSTGFERCSAESHVNPLTDYISHLKELQYICKQSIAYLQNRLLEIDQPYL 335
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01743 335 PANTHER PHENYLALANYL-TRNA SYNTHETASE 15 200 - GO:0005737(PANTHER)|GO:0070042(PANTHER)|GO:0070475(PANTHER)
Glco3g01743 335 Coils Coil 54 74 - -
Glco3g01743 335 FunFam Os09g0479300 protein 23 174 - -
Glco3g01743 335 Pfam rRNA (uridine-N3-)-methyltransferase BTM5-like 26 191 IPR019446 GO:0070042(InterPro)|GO:0070475(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01743 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:116209606 Glco3g01743 Glco-Chr3:116512546 dispersed
Glco Glco-Chr3:116512546 Glco9g03826 Glco-Chr9:488029861 dispersed
Glco Glco-Chr3:116503266 Glco3g01743 Glco-Chr3:116512546 tandem