AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01812 ATGAAGAAGCATCTTCTAACAGTTAGGGCACTATCCAAAACCCTAACCCTAATCCCATTCCCCCAAAAAGCTTCCTTCTCATCTTTCGCCATAAAAAATGTCACCAAAACCAACTTCGAATCCTCTCTATCTGACCTCCGAGGTCATGTCAGGGACTCGGACTTTGTGGCGATTGATTTGGAAATGACGGGGGTTACCAGTTCCCCGTGGAGAGAGATGTTTAAATTTGATAGGTTTGATGTTAGGTATTTGAAGGTCAAAGACTCTGCTGAGAAGTTTGCCGTTGTTCAGTTTGGCGTTTGTCCGTTTTGTTGGGATGAGGTTAAGAAGTCCTTCGTTGCGCACCCGCACAACTTTTATATCTTTCCACGGCAAGAAGTTGGAGGCGGTGACACGTCTTATGAATTTTTGTGTCAGACTTCTTCAATTGATTTCTTGGCCAAGTACCAGTTTGATTTCAACGTATGTATAAAAGAAGGGATATCTTATTTATCCAGAGCACATGAGGAGGAAGCTAGGTTGCAGTTACGTTCAGCACATGAAGATGTGTTAACAGAGTCGCAATCTGCAGCTAAAGAGACTAAAGATGTTCCACTGGTCAGAATGGCAGATATTCTTTTTGTGGAGAGAATGAGGAATAAGATCAGTACATGGCATGATGACCTGTTACGGATTAGAAATGGAGGGTCTGGTAGGACATCTGAAGACTCCACTGACTCAAATAATCAATTTCAGACCATATTCTTTAAGATGCGTCCAGCTATCAAACTGAATGGATTTACTCCCCGCCAACTGAGGTTGATCAAGTCGGTTGTAGAAAAGAGCTTTGAAGATTTAGCTTATATCCGTGTAAATGATGGTTCATGTTTCCAACAAATGATTGTCTACACAGACTCCGGAAGGGACCTAGAGTTGCTTATGAAAGAGGTTAAAGGAAATCTTTTGAAGGAAGCAGAGATGAAGATTGGAGCTGCCATTGGCTTCAGGCATGTGATTGACCTTCTTTCCTCTGAACGAAAGTTGATTGTTGGACACAATTGCTTTCTTGATGTTGCACATGTATGTAGAAAATTTTTGGGCCCTCTTCCTTTAAAGCTGGAAGAATACACAACATTAGCTCACACAAACTTCCCATGCATAATTGACACGAAGATCCTATTGAATGCAAATAGCATATTGCAATTAAAGATGAAGAGAAGTAGCACGTCATTGGCCAAGGCTTTTGCCATCATGTGTCCACATATTGCTTCTGGTGTCGGCAGTTCTGGTTTGGCTTCATCTGTTGCAGTGGAGGTTCAAGTGGATGATATGATATCATCAAACTGGAACTCCGGTGCCAAGCATGAAGCCGGTTATGATGCTTTCATGACAGGCTGCATTTTTGCACAATCATGCAATCATCTTGGTGTTGACTTCAGCTCTGACTCAACGCTGACGAATGAAGAGAAGCTTAGAAACTACATTAATCTTCTTTATCTCAGCTGGAGTAGTGGAGATATAGTTGACTTAAAAACTGGTAAAACTACGACAGAAGCTTCAGCGTTTAACAGTTTCAAAACCCCACAAAAAATTATATTTCCAAATATTGCCGTAATTTGGGGCTTCTCATCTAAACTCAAGGCGAGGGAGATAAAAAACTTGCTATGCAAAGTATATGGGTTGACCTCAGTTACATCCGTCTATCACTTGGACAAGACTGCTGTGTTTGTTCAATTTAGCAAGCCAGAATTGGTTTCTGAATGTATGGAACTGATATCACATATAGAGAAGAAGAAGAACGATGCAGTTTATGTTTTGCACCCTCTTTCAGAGCTTTTGGAAGGTGGATCTACACATTTCGCTTGTTATGAGGTATACAAGGAAATATGCGCTTCACCAATTTCGAAGGTCTTATTTGCCGATCAAGCAGAAGCCGTTGGTGTCAATTTAAACACCAAACTGTCAAAAAGTAATGCTCACGAAAATGATTCTTTTACTAATTTAAATTCTCCGATTGATGGGAAGATAGCAGAACCCAAACAACCAATAAAGTCTTCACCTAGTGGGGAAATGCTAGATATCGTCTCTTGCTGA 2073 40.86 MKKHLLTVRALSKTLTLIPFPQKASFSSFAIKNVTKTNFESSLSDLRGHVRDSDFVAIDLEMTGVTSSPWREMFKFDRFDVRYLKVKDSAEKFAVVQFGVCPFCWDEVKKSFVAHPHNFYIFPRQEVGGGDTSYEFLCQTSSIDFLAKYQFDFNVCIKEGISYLSRAHEEEARLQLRSAHEDVLTESQSAAKETKDVPLVRMADILFVERMRNKISTWHDDLLRIRNGGSGRTSEDSTDSNNQFQTIFFKMRPAIKLNGFTPRQLRLIKSVVEKSFEDLAYIRVNDGSCFQQMIVYTDSGRDLELLMKEVKGNLLKEAEMKIGAAIGFRHVIDLLSSERKLIVGHNCFLDVAHVCRKFLGPLPLKLEEYTTLAHTNFPCIIDTKILLNANSILQLKMKRSSTSLAKAFAIMCPHIASGVGSSGLASSVAVEVQVDDMISSNWNSGAKHEAGYDAFMTGCIFAQSCNHLGVDFSSDSTLTNEEKLRNYINLLYLSWSSGDIVDLKTGKTTTEASAFNSFKTPQKIIFPNIAVIWGFSSKLKAREIKNLLCKVYGLTSVTSVYHLDKTAVFVQFSKPELVSECMELISHIEKKKNDAVYVLHPLSELLEGGSTHFACYEVYKEICASPISKVLFADQAEAVGVNLNTKLSKSNAHENDSFTNLNSPIDGKIAEPKQPIKSSPSGEMLDIVSC 690
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01812 690 Gene3D - 232 507 IPR036397 GO:0003676(InterPro)
Glco3g01812 690 Gene3D - 33 200 IPR036397 GO:0003676(InterPro)
Glco3g01812 690 PANTHER POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1 31 639 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
Glco3g01812 690 MobiDBLite consensus disorder prediction 654 682 - -
Glco3g01812 690 Pfam CAF1 family ribonuclease 34 461 IPR006941 -
Glco3g01812 690 SUPERFAMILY Ribonuclease H-like 31 474 IPR012337 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01812 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:120772884 Glco4g03881 Glco-Chr4:272855859 dispersed