AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g01862 ATGGCCACACACACCATTTGTATGAATGTAACGCCGTTATCTTCATCTACAACCTCAATCTCAACAGTTTCACCTATTTTCTTAAAACCATATGCAACTAGGGTATCTCGCCGACACACACGCGCCGTATGTTGTTCATTTACCTCAATGGAGTCTGCCAGGATTAAGGTTGTTGGTGTCGGTGGCGGTGGTAATAATGCTGTTAACCGTATGATTGGTAGTGGTTTACAGGGTGTTGATTTTTACGCCATAAACACAGACTCTCAAGCCCTTCTCCAATCCGTTGCAGAAAACCCGATTCAAATCGGAGAGCTTTTGACTCGCGGACTTGGTACGGGTGGGAATCCGCTTTTGGGTGAGCAGGCAGCAGAGGAATCCAAGGAAGCTATTGGAAATGCTCTTAAAGGGTCGGATCTTGTCTTCATAACAGCCGGTATGGGTGGCGGTACAGGGTCTGGTGCTGCTCCAGTTGTAGCTCAGATAGCAAAGGAAGCGGGATATCTCACTGTAGGTGTTGTTACTTACCCATTCAGCTTTGAAGGACGTAAAAGATCAGTTCAGGCTTTGGAGGCTATTGAGAAGCTGCAAAAGAATGTCGACACGCTCATTGTCATCCCAAATGATCGTTTGTTGGACATTGCTGATGAACAAACTCCACTTCAGGATGCCTTTCTTCTTGCTGATGATGTACTCCGTCAAGGAGTTCAAGGAATTTCAGATATAATTACAATACCTGGACTGGTGAATGTGGACTTTGCAGACGTTAAGGCAGTGATGAAAGACTCTGGAACTGCAATGCTTGGTGTTGGTGTTTCCTCAAGCAAAAACCGAGCTGAAGAAGCAGCTGAACAAGCAACACTTGCTCCTTTAATTGGTTCGTCAATCCAATCTGCTACTGGAGTCGTTTATAATATTACAGGAGGGAAAGACATCACTTTGCAAGAAGTCAATAGGGTGTCTCAGGTTGTGACGAGCTTGGCGGATCCTTCTGCAAACATTATATTTGGGGCAGTGGTGGATGAGAGATATAATGGGGAGATCCATGTGACTATTGTTGCTACAGGATTTGCACAGTCGTTTCAGAAGTCTCTTTTGGCTGATCCTAAGGGAGCTAAACTTGTTGATAGAAACCAAGAAGCCACACAACCTTCGATTTCACCCAAGTCTTTGAACATGCCATCTTCGACTCCAGTTCGATCTTCTAGGAAACTCTTCTTTTAA 1221 44.8 MATHTICMNVTPLSSSTTSISTVSPIFLKPYATRVSRRHTRAVCCSFTSMESARIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSVAENPIQIGELLTRGLGTGGNPLLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSVQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIVATGFAQSFQKSLLADPKGAKLVDRNQEATQPSISPKSLNMPSSTPVRSSRKLFF 406
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g01862 406 SUPERFAMILY Tubulin C-terminal domain-like 248 363 IPR008280 -
Glco3g01862 406 FunFam Cell division protein FtsZ 1, chloroplastic 47 261 - -
Glco3g01862 406 SMART Tubulin-4 54 246 IPR003008 GO:0005525(InterPro)
Glco3g01862 406 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 147 153 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Glco3g01862 406 Gene3D Tubulin-FtsZ, GTPase domain 45 261 IPR036525 -
Glco3g01862 406 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 36 382 IPR045061 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Glco3g01862 406 NCBIfam cell division protein FtsZ 48 364 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Glco3g01862 406 ProSitePatterns FtsZ protein signature 2. 138 159 IPR020805 GO:0005525(InterPro)
Glco3g01862 406 SUPERFAMILY Tubulin nucleotide-binding domain-like 53 249 IPR036525 -
Glco3g01862 406 ProSitePatterns FtsZ protein signature 1. 85 119 IPR020805 GO:0005525(InterPro)
Glco3g01862 406 Pfam FtsZ family, C-terminal domain 263 356 IPR024757 -
Glco3g01862 406 Hamap Cell division protein FtsZ [ftsZ]. 50 395 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Glco3g01862 406 SMART Tubulin-C-4 248 365 IPR018316 -
Glco3g01862 406 Gene3D - 262 367 IPR037103 -
Glco3g01862 406 FunFam Cell division protein FtsZ 1, chloroplastic 219 356 - -
Glco3g01862 406 CDD FtsZ-type1 70 355 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Glco3g01862 406 MobiDBLite consensus disorder prediction 379 406 - -
Glco3g01862 406 PRINTS Cell division protein FtsZ signature 139 159 IPR003008 GO:0005525(InterPro)
Glco3g01862 406 PRINTS Cell division protein FtsZ signature 230 252 IPR003008 GO:0005525(InterPro)
Glco3g01862 406 PRINTS Cell division protein FtsZ signature 253 274 IPR003008 GO:0005525(InterPro)
Glco3g01862 406 PRINTS Cell division protein FtsZ signature 167 188 IPR003008 GO:0005525(InterPro)
Glco3g01862 406 Pfam Tubulin-FtsZ family, GTPase domain 54 214 IPR003008 GO:0005525(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g01862 K03531 cell division protein FtsZ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:124492499 Glco9g01918 Glco-Chr9:153020105 dispersed