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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco7g02057 ATGGCAAACCCCGCCGCCGTAAACTTGCTCACAAACATCGCACGCGTCGCCATCGGCCTCGGTGCAACCGCCACAGTCGCCAGCTCAGCTCTCTACACCGTCGACGGCGGTCAACGCGCCGTCTTGTTTGACCGTTTCCGTGGAGTCATCGATGAAACTGTTGGTGAAGGCACTCACTTCTTGATCCCGTGGCTTCAGACTCCTTACATTTTCGACATCCGTACTAGGCCACATACTTTCTCCTCAATTTCCGGAACGAAAGATCTTCAGATGGTCAACTTAACTCTCCGTGTGCTTTCGCGTCCTGAGGTTAACCGTCTTCCAGCCATTTTCAAGACCCTAGGGACAGAGTATGATGAGAAAGTGTTGCCTTCTATTGGTAACGAGGTTTTGAAAGCTGTTGTGGCTCAGTTTAATGCTGATCAGCTTCTTACTGAGCGTCCCCAGGTGAGCGCCTTGGTTAGGGACAGTTTAGTGAAGCGTGCCAAAGACTTTAACATTTGTTTGGATGATGTGGCAATTACACACTTGTCGTATGGTGCCGAGTTTAGTAGGGCGGTTGAGCAGAAGCAGGTGGCGCAACAGGAGGCTGAGAGGAGTAAGTTTGTTGTGGCGAAAGCGGAGCAGGAGAGGCGAGCTGCGATTATTAGGGCAGAAGGTGAGAGTGAGAGTGCTAAGCTGATTTCAGATGCGACTAGTGCTGCTGGTATGGGGTTGATTGAGTTGAGGAGGATTGAGGCGAGTAGGGAGATTTCGACTACTTTGGCTAGGAGTGGGAATGTTATGTATCTGCCGAATTCCGGGAGTCAGATGTTGCTTGGACTTAATCCCTCTCGTTAG 840 50.83 MANPAAVNLLTNIARVAIGLGATATVASSALYTVDGGQRAVLFDRFRGVIDETVGEGTHFLIPWLQTPYIFDIRTRPHTFSSISGTKDLQMVNLTLRVLSRPEVNRLPAIFKTLGTEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRDSLVKRAKDFNICLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVAKAEQERRAAIIRAEGESESAKLISDATSAAGMGLIELRRIEASREISTTLARSGNVMYLPNSGSQMLLGLNPSR 279
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco7g02057 279 SMART PHB-4 30 191 IPR001107 -
Glco7g02057 279 PRINTS Prohibitin signature 186 209 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 PRINTS Prohibitin signature 92 111 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 PRINTS Prohibitin signature 138 154 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 PRINTS Prohibitin signature 209 225 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 PRINTS Prohibitin signature 115 133 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 PRINTS Prohibitin signature 161 180 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 PRINTS Prohibitin signature 74 90 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 Gene3D Band 7 domain 59 193 IPR036013 -
Glco7g02057 279 SUPERFAMILY Band 7-SPFH domain 62 198 IPR036013 -
Glco7g02057 279 Pfam SPFH domain - Band 7 family 33 210 IPR001107 -
Glco7g02057 279 PANTHER PROHIBITIN 4 277 IPR000163 GO:0005739(PANTHER)|GO:0007005(PANTHER)|GO:0016020(InterPro)
Glco7g02057 279 Coils Coil 190 210 - -
Glco7g02057 279 CDD SPFH-prohibitin 31 225 IPR000163 GO:0016020(InterPro)
Glco7g02057 279 FunFam Prohibitin 2 59 193 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco7g02057 K17080 prohibitin 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr7:342088270 Glco8g06776 Glco-Chr8:557182783 dispersed