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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco7g02099 ATGCCTTCATTAATCCCAGAAGAACCACTTCTAACCCCAACCGAAGACAGGTTCTGCATGTTCCCAATTCACTACCCTCAAATATGGGAAATGTACAAAAAAGCCCAAGCTTCTTTCTGGACTGCAGAAGAAGTCGACTTATCATCAGATATCCGTCACTGGGAGTCGTTAACTGATGGAGAACGTCATTTCATCACACACGTTCTCGCGTTTTTTGCCTCTTCTGATGGCATTGTGTTGGAGAATTTGGCTACTAGGTTTATGAGTGACGTCCAAGTAGCGGAAGCCAGGGCTTTTTACGGGTTTCAAATTGCAATAGAGAATATACATTCCGAGATGTATAGTTTGCTTTTGGAAACATATGTGAAGGATGGGAAGGAGAAAGATAGGTTGTTTAGGGCTGTCGAGACCATTCCTTGTGTCGAGAAAAAGGCCAAGTGGGCGATGAAGTGGATCCAGGGCTCCGAGTCGTTTGCTGAGAGGATTATTGCCTTTGCGTGTGTTGAAGGTATATTCTTCTCAGGAAGTTTTTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCAGGGCTAACCTTCTCAAACGAGTTAATCTCCCGAGACGAAGGCCTCCACTGCGATTTCGCCTGCCTACTCTACACTCTACTAAACAACAAACTAACAGAAGAGCGCGTAAAGTCCATAGTATCAGACGCAGTTGACATCGAACGTGAGTTTGTTTGTGATGCGCTACCATGTGCACTAGTTGGCATGAATGGTGAACTCATGAGTGAATATATCCAGTTTGTTGCGGATAGGTTGTTGGTGTCACTAGGATTTAGCAAAATGTACAATGTTTCGAACCCGTTTGATTGGATGGAACTGATTTCGTTACAAGGGAAGACTAATTTCTTCGAGAAGCGAGTAGGGGAGTATCAAAAGGCTTCGATTATGTCGAATTTGAATGGAAATGGTGCTGCTGATCATGTGTTCAAGATGGATGAAGATTTTTGA 996 43.78 MPSLIPEEPLLTPTEDRFCMFPIHYPQIWEMYKKAQASFWTAEEVDLSSDIRHWESLTDGERHFITHVLAFFASSDGIVLENLATRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYVKDGKEKDRLFRAVETIPCVEKKAKWAMKWIQGSESFAERIIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLNNKLTEERVKSIVSDAVDIEREFVCDALPCALVGMNGELMSEYIQFVADRLLVSLGFSKMYNVSNPFDWMELISLQGKTNFFEKRVGEYQKASIMSNLNGNGAADHVFKMDEDF 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco7g02099 331 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 8 331 IPR000358 GO:0009263(InterPro)
Glco7g02099 331 Pfam Ribonucleotide reductase, small chain 17 283 IPR000358 GO:0009263(InterPro)
Glco7g02099 331 CDD RNRR2 18 292 IPR033909 GO:0009263(InterPro)
Glco7g02099 331 Gene3D Ribonucleotide Reductase, subunit A 4 308 IPR012348 GO:0016491(InterPro)
Glco7g02099 331 ProSitePatterns Ribonucleotide reductase small subunit signature. 106 122 IPR030475 -
Glco7g02099 331 SUPERFAMILY Ferritin-like 6 308 IPR009078 -
Glco7g02099 331 PIRSF NrdB 6 317 IPR000358 GO:0009263(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco7g02099 K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
Glco7g02099 K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
100375 Glco7g02099 Glco8g02399
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr7:344470306 Glco8g02399 Glco-Chr8:129590105 dispersed
Glco Glco-Chr7:344163664 Glco7g02099 Glco-Chr7:344470306 tandem