AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco7g02127 ATGGCTGTTAAGGCTGCTATACATGTTACCGATGTGTCACATTTGGATCAAGTTAATGATCCTGCCGCTTCTTTGACGTCAATTTATGCCACACGGCTACCTAATGGATTGGATGTGAGCAATGGGCGAAAAAGTTTGCCAAAGTTCATGGTGGTGGGTCACCGTGGTCATGGCATGAATGTTTTGCAGTCAACGGATAAAAGAATGAAAGCTTATAAGGAAAACTCGATTACTTCATTCAATAATGCTGCCAATCATGCTCTTGATTACATTGAGTTTGACGTTCAGGTGACAAAAGATAACATTCCAATCATCTTCCACGACAATTTTATTGTATCTGCAGAGAACGGTCAAGTAGTTGAGAAGAGAGTGACTGATTTGACCGTTGATGAATTCTTTAGCTACGGGCCTCAAAGAACATCCGGTCAAGTGGGAAAATCTTTGCTCAGGCAGATCAATGGAAATATTGTCGGGTGGGACGTTGAGGTCGATGATCATTCTTGTACTCTTGAAGAAGCGTTCCAGAAAGTGAACCCTTGTTTGGGATTCAACATTGAGTTGAAATTTGATGATTATGTTGTTTACGAAGAAGAGTATCTCATTCATGTTCTTCAAGTCATTTTGAAAGTGGTATACGAAAATGCCCAAGAAAGACCTGTTCTATTTTCAACCTTTCAACCCGATGTGGCCTTGCTAATGAAGAAACTTCAGCATACTTACCCGGTATACTTCTTGACAAATGGAGGAAACGAGATATATGATGACGTGCGAATGAACTCATTAGAAGAAGCCAAGAAGCTGGCCCTATCGGGTGGTTTGGATGGAATTGTTTCAGAAGTAAAGGGTATCTTTAGAAACCCTTCAGTAGTACGCGAGATTAAAGAATCAAATCTCTCACTCCTTACTTATGGCAAACTAAATAATGTCCCTGAAGCCGTGCATGTTCAATATCTTATGGGTGTCGAAGGTGTGATTGTTGACTTGGTACAAGAAATTACGAGTGCGGTCCAAGCTTATAGCAACAGCCACAAGACTGTAACAGAAGGAGAGGATGGAGGATTAAAGGTGATGGACAACACAAATAAGATCGAGTTGTCGTTTCTGCTGAGCTTGGTTTCACAGTTGGTTCAGCATTAA 1137 40.99 MAVKAAIHVTDVSHLDQVNDPAASLTSIYATRLPNGLDVSNGRKSLPKFMVVGHRGHGMNVLQSTDKRMKAYKENSITSFNNAANHALDYIEFDVQVTKDNIPIIFHDNFIVSAENGQVVEKRVTDLTVDEFFSYGPQRTSGQVGKSLLRQINGNIVGWDVEVDDHSCTLEEAFQKVNPCLGFNIELKFDDYVVYEEEYLIHVLQVILKVVYENAQERPVLFSTFQPDVALLMKKLQHTYPVYFLTNGGNEIYDDVRMNSLEEAKKLALSGGLDGIVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVQAYSNSHKTVTEGEDGGLKVMDNTNKIELSFLLSLVSQLVQH 378
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco7g02127 378 FunFam Glycerophosphodiester phosphodiesterase GDPD2 40 338 - -
Glco7g02127 378 SUPERFAMILY PLC-like phosphodiesterases 47 330 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Glco7g02127 378 Pfam Glycerophosphoryl diester phosphodiesterase family 54 329 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Glco7g02127 378 ProSiteProfiles GP-PDE domain profile. 49 336 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Glco7g02127 378 Gene3D Phosphatidylinositol (PI) phosphodiesterase 40 337 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Glco7g02127 378 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 40 342 IPR051578 GO:0046475(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco7g02127 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
100377 Glco7g02127 Glco8g02427
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr1:153653036 Glco7g02127 Glco-Chr7:347396555 wgd
Glco Glco-Chr7:347396555 Glco8g02427 Glco-Chr8:131439439 wgd