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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco7g02152 ATGGAGAGAACCGAGGCGTTTGGTGGGTTCGGGATTGGTTTGGGAATGGGTATGGGAATGGGTTTTGGGAATGATAATAATAATAATAATGTTGGCGTTCAGGAGGACACTAGTAGTGGGTTTAAAACTACTGCTACTAAAAATGTTCCTGTTACGGTTTCTGGTTCTAGTGTTAGTGTTGGGGTTGATGTAGACAGGGATCTGGTTGCCGCTGCTAGGTTTGATTTTCTTAAGAAGAAAAGGATGCCTAGGTTTCGGCGAGGGGGTTCCGGTGTGAGGTCGTTTCGGCCTTTTACTTCGTTTGCTGGTCCTTTGTCGCCAAATATTGTTGATCATGGAAGGCTGACCTTTCTCTTCAGCAAGAAGCTTCAGAAGAGTGACGTAGGTGTGCTCAAAAGAATTGTGCTGCCTAAGAAACCAGCTGAGTCACACCTCCCTGCTTTGATCGCAAAGGAAGGTATCATACTTGAAATGGATGACATGGATGGCATGCACGTCTGGGGTTTCAAGTTTAGGTTCTGGCCAAATAACAACAGCCGCATGTATGTCCTTGAGGGCACTGGGGAATTTGCTGAGGAGCATGGGCTGCAAGTGGGTGACTATATAATGTTGTACCGAGATTCAGTGAATCTCAACTATGTGATACATGCAGTAAAAGCTTATGAAGTTGAGCAATATCCCGACAAAGAAGTGAAAACAAGCCTCGCTACCCAAGTGAAATCTGTCAAGGCACTGCCTAATAATGGTGGTTTGATGAATCAGAACTGGCCTTGGGGAGGTCTTGAAGTTGAGGTGTTTAACCCCATTAACTATCCTACAAACGAATCACCTGTTGAAGAACAAATGGATATGACTTTTGTATATGATACAAGCTATTCCAATGACACTATGACACCACTTGACTTCTTGGGTGGATTCATGTCAAGTTACCCGACAGCGCAGCCTAACTTTGCTATTGATAATTTGTCTATTGATGATCTGTACAAGATTTAG 993 43.81 MERTEAFGGFGIGLGMGMGMGFGNDNNNNNVGVQEDTSSGFKTTATKNVPVTVSGSSVSVGVDVDRDLVAAARFDFLKKKRMPRFRRGGSGVRSFRPFTSFAGPLSPNIVDHGRLTFLFSKKLQKSDVGVLKRIVLPKKPAESHLPALIAKEGIILEMDDMDGMHVWGFKFRFWPNNNSRMYVLEGTGEFAEEHGLQVGDYIMLYRDSVNLNYVIHAVKAYEVEQYPDKEVKTSLATQVKSVKALPNNGGLMNQNWPWGGLEVEVFNPINYPTNESPVEEQMDMTFVYDTSYSNDTMTPLDFLGGFMSSYPTAQPNFAIDNLSIDDLYKI 330
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco7g02152 330 CDD B3-DNA 117 216 IPR003340 GO:0003677(InterPro)
Glco7g02152 330 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 112 215 IPR044800 GO:0003700(InterPro)
Glco7g02152 330 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677(InterPro)
Glco7g02152 330 SMART B3-2 119 221 IPR003340 GO:0003677(InterPro)
Glco7g02152 330 Gene3D - 115 232 IPR015300 -
Glco7g02152 330 Pfam B3 DNA binding domain 119 216 IPR003340 GO:0003677(InterPro)
Glco7g02152 330 SUPERFAMILY DNA-binding pseudobarrel domain 117 216 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco7g02152 K09287 RAV-like factor
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Event-related genes

Select Gene_1 Gene_2 Event_name
100379 Glco7g02152 Glco8g02436
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr7:350125918 Glco7g07188 Glco-Chr7:586187457 dispersed
Glco Glco-Chr1:506742526 Glco7g02152 Glco-Chr7:350125918 transposed
Glco Glco-Chr4:68756119 Glco7g02152 Glco-Chr7:350125918 transposed
Glco Glco-Chr6:507617165 Glco7g02152 Glco-Chr7:350125918 transposed
Glco Glco-Chr6:527701427 Glco7g02152 Glco-Chr7:350125918 transposed
Glco Glco-Chr8:574905374 Glco7g02152 Glco-Chr7:350125918 transposed
Glco Glco-Chr7:350125918 Glco8g02436 Glco-Chr8:131987147 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Glco1g00594 . 9 620 B3 DNA Binding Superfamily AT4G23980 57.367 0.0 666.0
Glco1g05014 ACH 7 734 B3 DNA Binding Superfamily AT2G30470 43.423 0.0 571.0
Glco1g05878 . 170 294 B3 DNA Binding Superfamily AT1G05930 29.851 1.40e-07 50.1
Glco1g05972 . 170 289 B3 DNA Binding Superfamily AT1G05930 29.771 7.26e-07 45.4
Glco1g05981 . 170 294 B3 DNA Binding Superfamily AT1G05930 29.412 2.44e-06 46.6
Glco1g05983 . 148 294 B3 DNA Binding Superfamily AT1G05930 28.662 6.59e-07 48.1
Glco1g05987 . 126 294 B3 DNA Binding Superfamily AT1G05930 28.191 8.24e-07 48.1
Glco1g05988 . 170 294 B3 DNA Binding Superfamily AT1G05930 28.889 6.30e-06 45.4
Glco1g05989 . 170 294 B3 DNA Binding Superfamily AT1G05930 29.412 2.41e-06 46.6
Glco1g05993 . 171 289 B3 DNA Binding Superfamily AT1G05930 29.134 4.91e-07 45.8
Glco1g06096 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.298 1.84e-08 51.6
Glco1g06097 . 170 294 B3 DNA Binding Superfamily AT1G05930 30.882 8.06e-08 50.8
Glco1g06098 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.298 5.34e-08 50.1
Glco1g06101 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.298 5.00e-08 50.1
Glco1g06102 . 170 294 B3 DNA Binding Superfamily AT1G05930 30.882 8.06e-08 50.8
Glco1g06103 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.298 5.34e-08 50.1
Glco1g06104 . 170 294 B3 DNA Binding Superfamily AT1G05930 30.882 8.06e-08 50.8
Glco1g06105 . 170 294 B3 DNA Binding Superfamily AT1G05930 30.882 8.06e-08 50.8
Glco1g06106 . 170 294 B3 DNA Binding Superfamily AT1G05930 30.882 7.63e-08 51.2
Glco1g06107 . 170 289 B3 DNA Binding Superfamily AT1G05930 30.534 2.29e-07 48.1
Glco1g06108 . 170 294 B3 DNA Binding Superfamily AT1G05930 30.882 8.06e-08 50.8
Glco1g06110 . 170 289 B3 DNA Binding Superfamily AT1G05930 30.534 1.23e-07 48.9
Glco1g06236 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 2.88e-09 55.5
Glco1g06237 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 1.98e-09 55.5
Glco1g06238 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 2.88e-09 55.5
Glco1g06239 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 2.23e-09 55.8
Glco1g06241 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 2.90e-09 55.5
Glco1g06242 . 170 289 B3 DNA Binding Superfamily AT1G05930 31.746 2.37e-09 55.8
Glco1g06551 ACH 1 447 B3 DNA Binding Superfamily AT1G19220 73.581 0.0 668.0
Glco2g00748 . 7 245 B3 DNA Binding Superfamily AT4G00260 28.063 1.43e-15 73.9
Glco2g01556 . 478 575 B3 DNA Binding Superfamily AT4G23980 40.816 1.01e-17 76.6
Glco2g02246 ACH 1 593 B3 DNA Binding Superfamily AT4G30080 56.209 0.0 613.0
Glco2g03809 ACH 16 140 B3 DNA Binding Superfamily AT4G01580 37.984 2.38e-21 84.0
Glco2g07001 . 4 217 B3 DNA Binding Superfamily AT5G58280 51.982 2.04e-67 211.0
Glco3g00204 . 8 221 B3 DNA Binding Superfamily AT3G19184 58.716 1.23e-72 221.0
Glco3g00208 . 4 217 B3 DNA Binding Superfamily AT5G58280 48.661 1.68e-65 206.0
Glco3g02277 . 1 639 B3 DNA Binding Superfamily AT1G59750 66.82 0.0 870.0
Glco3g03560 ACH 57 491 B3 DNA Binding Superfamily AT1G19220 61.435 3.25e-166 512.0
Glco3g06603 . 1 464 B3 DNA Binding Superfamily AT1G30330 87.393 0.0 832.0
Glco3g06856 . 1 488 B3 DNA Binding Superfamily AT2G33860 56.301 7.38e-180 520.0
Glco4g01138 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 53.639 0.0 708.0
Glco4g01220 ACH 4 693 B3 DNA Binding Superfamily AT2G28350 54.993 0.0 655.0
Glco4g01519 . 141 198 B3 DNA Binding Superfamily AT3G26790 60.345 3.30e-16 77.4
Glco4g02258 . 13 669 B3 DNA Binding Superfamily AT4G30080 55.298 0.0 691.0
Glco4g02964 . 170 289 B3 DNA Binding Superfamily AT1G05930 29.365 2.30e-06 47.8
Glco4g03628 . 1 591 B3 DNA Binding Superfamily AT2G46530 57.792 0.0 683.0
Glco4g03850 . 164 289 B3 DNA Binding Superfamily AT1G05930 33.588 2.87e-13 67.0
Glco4g05240 . 134 229 B3 DNA Binding Superfamily AT3G19184 61.458 1.90e-36 122.0
Glco4g06049 . 1 847 B3 DNA Binding Superfamily AT5G62000 57.737 0.0 924.0
Glco5g01388 . 445 613 B3 DNA Binding Superfamily AT4G23980 46.629 7.06e-42 146.0
Glco5g01390 . 7 613 B3 DNA Binding Superfamily AT4G23980 58.193 0.0 705.0
Glco5g05012 . 164 289 B3 DNA Binding Superfamily AT1G05930 33.846 4.01e-13 65.9
Glco6g00639 . 4 248 B3 DNA Binding Superfamily AT3G19184 51.383 6.78e-73 223.0
Glco6g00966 . 167 294 B3 DNA Binding Superfamily AT1G05930 32.353 1.55e-12 63.5
Glco6g01467 . 53 843 B3 DNA Binding Superfamily AT5G62000 59.779 0.0 933.0
Glco6g03801 . 70 221 B3 DNA Binding Superfamily AT5G58280 58.553 1.56e-60 189.0
Glco6g04622 ACH 5 733 B3 DNA Binding Superfamily AT4G32010 46.115 0.0 652.0
Glco6g04664 . 4 219 B3 DNA Binding Superfamily AT5G58280 51.982 3.69e-69 214.0
Glco6g04966 . 431 683 B3 DNA Binding Superfamily AT3G24650 59.176 1.41e-91 299.0
Glco6g05901 . 150 527 B3 DNA Binding Superfamily AT4G00260 22.251 5.67e-16 79.3
Glco6g06078 . 23 162 B3 DNA Binding Superfamily AT3G06160 24.306 1.69e-08 51.6
Glco6g06083 . 7 225 B3 DNA Binding Superfamily AT4G00260 29.075 5.36e-16 75.1
Glco6g06084 . 18 236 B3 DNA Binding Superfamily AT4G00260 27.391 1.14e-16 77.8
Glco6g06090 . 30 125 B3 DNA Binding Superfamily AT3G18960 28.713 6.08e-06 43.9
Glco7g00763 ACH 1 802 B3 DNA Binding Superfamily AT5G37020 65.895 0.0 996.0
Glco7g01389 . 115 230 B3 DNA Binding Superfamily AT3G19184 42.241 9.49e-25 101.0
Glco7g01529 . 4 110 B3 DNA Binding Superfamily AT5G66980 42.593 1.40e-22 89.4
Glco7g01811 . 641 696 B3 DNA Binding Superfamily AT2G30470 50.0 1.31e-10 61.6
Glco7g02152 ACH 45 313 B3 DNA Binding Superfamily AT3G26790 41.176 2.34e-55 181.0
Glco7g02604 . 30 129 B3 DNA Binding Superfamily AT4G01580 30.392 4.08e-09 53.9
Glco7g05515 ACH 1 668 B3 DNA Binding Superfamily AT4G30080 52.693 0.0 641.0
Glco7g06810 . 33 118 B3 DNA Binding Superfamily AT4G21550 41.86 2.95e-20 87.0
Glco7g06815 . 19 118 B3 DNA Binding Superfamily AT4G21550 38.614 1.75e-19 84.7
Glco7g06816 . 282 393 B3 DNA Binding Superfamily AT4G32010 43.363 1.36e-22 95.1
Glco7g07174 . 321 436 B3 DNA Binding Superfamily AT4G21550 40.336 2.70e-22 93.6
Glco7g07177 . 278 385 B3 DNA Binding Superfamily AT4G32010 47.706 4.61e-25 101.0
Glco7g07178 . 278 385 B3 DNA Binding Superfamily AT4G32010 49.541 1.31e-26 105.0
Glco7g07183 . 17 103 B3 DNA Binding Superfamily AT4G21550 47.126 3.28e-21 93.6
Glco7g07184 . 20 103 B3 DNA Binding Superfamily AT4G21550 48.276 2.19e-21 90.5
Glco7g07185 . 321 427 B3 DNA Binding Superfamily AT4G21550 42.727 2.54e-20 87.4
Glco7g07186 . 20 118 B3 DNA Binding Superfamily AT4G21550 39.806 1.91e-21 90.9
Glco7g07187 ACH 323 430 B3 DNA Binding Superfamily AT4G21550 44.144 2.94e-21 95.1
Glco7g07188 . 321 428 B3 DNA Binding Superfamily AT4G21550 45.045 1.14e-22 99.4
Glco7g07189 . 323 427 B3 DNA Binding Superfamily AT4G21550 43.396 1.22e-21 91.7
Glco7g07193 . 16 118 B3 DNA Binding Superfamily AT4G21550 39.806 1.71e-20 87.4
Glco7g07194 . 15 118 B3 DNA Binding Superfamily AT4G21550 39.423 5.25e-20 86.3
Glco7g07196 . 16 118 B3 DNA Binding Superfamily AT4G21550 39.806 6.88e-21 89.4
Glco8g00080 ACH 1 670 B3 DNA Binding Superfamily AT4G30080 56.914 0.0 719.0
Glco8g02436 ACH 71 212 B3 DNA Binding Superfamily AT3G26790 46.479 3.45e-38 134.0
Glco8g02662 ACH 4 686 B3 DNA Binding Superfamily AT2G28350 50.706 0.0 632.0
Glco8g02698 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 55.126 0.0 754.0
Glco8g03637 ACH 1 796 B3 DNA Binding Superfamily AT5G37020 66.019 0.0 1007.0
Glco8g04486 . 1 483 B3 DNA Binding Superfamily AT2G33860 51.282 1.34e-159 469.0
Glco8g06214 . 150 289 B3 DNA Binding Superfamily AT1G05930 28.276 2.58e-09 55.8
Glco8g06229 . 167 289 B3 DNA Binding Superfamily AT1G05930 26.667 1.53e-06 47.8
Glco8g06230 . 167 289 B3 DNA Binding Superfamily AT1G05930 26.667 9.63e-07 48.5
Glco8g07173 . 7 777 B3 DNA Binding Superfamily AT4G32010 47.967 0.0 688.0
Glco9g00038 . 114 477 B3 DNA Binding Superfamily AT1G19220 77.596 0.0 558.0
Glco9g00514 . 167 289 B3 DNA Binding Superfamily AT1G05930 26.667 2.70e-06 43.9
Glco9g01135 . 32 900 B3 DNA Binding Superfamily AT1G19850 60.589 0.0 973.0
Glco9g01834 . 235 300 B3 DNA Binding Superfamily AT1G30330 75.758 1.78e-26 98.2
Glco9g03396 . 1 221 B3 DNA Binding Superfamily AT3G19184 57.265 5.72e-77 231.0
Glco9g03399 . 71 199 B3 DNA Binding Superfamily AT5G42700 41.86 3.69e-28 104.0
Glco9g03598 . 76 225 B3 DNA Binding Superfamily AT4G00260 28.571 1.33e-07 49.3
Glco9g04570 . 314 382 B3 DNA Binding Superfamily AT5G62000 78.261 1.19e-34 122.0
Glco9g04571 . 416 487 B3 DNA Binding Superfamily AT5G62000 50.0 2.88e-13 61.2
Glco9g04905 . 5 488 B3 DNA Binding Superfamily AT1G19220 68.273 0.0 656.0
Glco9g05634 . 2 238 B3 DNA Binding Superfamily AT4G00260 28.571 2.61e-20 88.2
Glco9g05638 . 2 236 B3 DNA Binding Superfamily AT4G00260 27.16 5.48e-17 78.6
Glco9g05641 . 2 230 B3 DNA Binding Superfamily AT4G00260 28.571 1.60e-19 85.9
Glco9g05643 . 2 236 B3 DNA Binding Superfamily AT4G00260 27.572 4.14e-18 82.0
Glco9g05726 . 2 225 B3 DNA Binding Superfamily AT4G00260 29.185 8.80e-20 87.0
Glco10000069.1g00003 . 134 218 B3 DNA Binding Superfamily AT3G19184 66.667 8.44e-38 125.0
Glco10000156.1g00021 . 170 667 B3 DNA Binding Superfamily AT4G32010 33.789 5.03e-76 261.0
Glco10000356.1g00017 . 141 198 B3 DNA Binding Superfamily AT3G26790 58.621 2.11e-15 75.1
Glco10000506.1g00003 . 36 205 B3 DNA Binding Superfamily AT5G42700 41.709 4.50e-42 147.0
Glco10000506.1g00004 . 112 230 B3 DNA Binding Superfamily AT3G19184 52.101 1.92e-37 135.0
Glco10000583.1g00001 . 115 252 B3 DNA Binding Superfamily AT3G19184 42.029 7.13e-34 129.0
Glco10000583.1g00002 . 134 274 B3 DNA Binding Superfamily AT3G19184 31.757 1.87e-18 82.4
Glco10000583.1g00010 . 92 197 B3 DNA Binding Superfamily AT5G42700 51.887 1.38e-32 121.0
Glco10000591.1g00004 . 164 289 B3 DNA Binding Superfamily AT1G05930 33.582 3.37e-12 63.9
Glco10000591.1g00006 . 171 289 B3 DNA Binding Superfamily AT1G05930 33.071 1.58e-11 61.2
Glco10000591.1g00007 . 167 294 B3 DNA Binding Superfamily AT1G05930 31.618 5.57e-13 65.1
Glco10000591.1g00014 . 167 294 B3 DNA Binding Superfamily AT1G05930 31.618 5.68e-13 65.1
Glco10000646.1g00009 . 141 313 B3 DNA Binding Superfamily AT3G26790 36.932 2.04e-19 82.0
Glco10001745.1g00012 . 148 289 B3 DNA Binding Superfamily AT1G05930 27.703 1.51e-08 53.1
Glco10001834.1g00007 . 14 124 B3 DNA Binding Superfamily AT3G18960 27.928 1.15e-10 60.1
Glco10001967.1g00007 . 17 199 B3 DNA Binding Superfamily AT5G42700 33.88 1.02e-28 108.0
Glco10001967.1g00008 . 47 199 B3 DNA Binding Superfamily AT5G42700 37.255 7.37e-26 101.0
Glco10001997.1g00002 . 134 218 B3 DNA Binding Superfamily AT3G19184 66.667 8.44e-38 125.0
Glco10002137.1g00007 . 4 220 B3 DNA Binding Superfamily AT3G19184 52.889 8.78e-67 206.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Glco B3 4.2e-14 CL0405 TF B3