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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00609 ATGTCGTTGACCATCAAACAAGAAGTCCAAGAGGAACCCAGAAATGGGTTTCAAGAAATTGTTGAAGAAAAACAAAGTATGAAGAGAATTCAGAGTGAATCATCCATTGATGAAACTGAAGATGAAGGTGATGAAGAAGCAGAAGATAATAATAATAATAACAATAAAATTGAATTGGGTCCTCAGTGCACCCTCAAATCACAACTTGAGAAAGATAAGGATGATGAGAGTCTTAGAAAGTGGAAAGAACAGCTTCTTGGAAATGTTGATATTAATGATGTTGGAGAGTCACTCGAACCGGAAGTGAAAATCATTAGTCTTTCGATCTCGTCTCCTGGGAGATCTGACATTGTTCTTGCGATACCCGAAGATGGAAAGCCGAAAGGGTTATGGTTTACGTTGAAAGAAGGTTGTCGTTACAGTCTACGGTTCAAGTTTCAAGTTGGGTGTAATATTGTTTCCGGTTTAAAGTACACCAACAACGTATGGAGAACTGGTGTCAGAGTGGATAGAGTGAAACAAATGCTTGGAACTTTTAGCCCCCAACAAGAAGCATATACTTATGAGATGCCTGAAGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATCAACTATGCGTTTGATATCAGAAAAGATTGGGCCAACTCTGAATAA 711 38.54 MSLTIKQEVQEEPRNGFQEIVEEKQSMKRIQSESSIDETEDEGDEEAEDNNNNNNKIELGPQCTLKSQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKIISLSISSPGRSDIVLAIPEDGKPKGLWFTLKEGCRYSLRFKFQVGCNIVSGLKYTNNVWRTGVRVDRVKQMLGTFSPQQEAYTYEMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYAFDIRKDWANSE 236
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00609 236 PRINTS RHO protein GDP dissociation inhibitor signature 211 228 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hean11g00609 236 PRINTS RHO protein GDP dissociation inhibitor signature 152 168 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hean11g00609 236 PRINTS RHO protein GDP dissociation inhibitor signature 169 184 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hean11g00609 236 PRINTS RHO protein GDP dissociation inhibitor signature 185 197 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hean11g00609 236 MobiDBLite consensus disorder prediction 12 36 - -
Hean11g00609 236 SUPERFAMILY E set domains 43 233 IPR014756 -
Hean11g00609 236 Gene3D Coagulation Factor XIII, subunit A, domain 1 54 234 IPR024792 -
Hean11g00609 236 Pfam RHO protein GDP dissociation inhibitor 44 231 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hean11g00609 236 MobiDBLite consensus disorder prediction 1 61 - -
Hean11g00609 236 PANTHER RHO GDP-DISSOCIATION INHIBITOR 34 232 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Hean11g00609 236 FunFam Rho GDP-dissociation inhibitor 1 55 234 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00609 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
101044 Hean11g00609 Hean3g02145
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:11913173 Hean3g02145 Hean-Chr3:120317319 dispersed