AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00625 ATGGGTAAAATCTTTGGTGTGTTATTTTGCATATTGATATCAAATTTAGTCTCATCATATGCTCAACAAAACTGCAACAGCTACGCCTTTTCAAGAAACACAATCTACACCACATGTGTCTCTTTACCCGTTCTCAACTCACATCTCCACTGGAACTACCACTCCTCCAACTCCACCGTCGATCTAGCTTTCCGGCACGCCGGATCCGACACATCTCAATGGGTTGCGTGGGCCCTCAACATCAACGGTCAGGGTATGGTTGGTGCCCAGGCTCTTGTTGCTGTAACCGGTTCAAACGGGTCGGTTCAAGCCTATACTTCGTCGGTAACCGGTTACCAGACCGGTCTGCAACCGAGTCAGTTGAGCTTTGATGTGCCCAGTATCACTGCTGAGAGGGTTCGCGGTGATGTGCTGATTTATGCGACGTTGGTGTTGCCAAGTGGAGGGACCAGATTTAATCAAGTTTGGCAGGTGGGTCCGGTTAATAATGGAGCTCCGGGTATTCATGGGTTGGGTGCTGATAACCGGAATTCTCTTGGGTCGGTTGATTTTATTAGTGGTGAGACTGGTGCTGGTGGGAGTATTGGTGGGTCCCGCCAACGCAGGAGAAATACTCATGGAGTATTGAATGCGGTTAGTTGGGGAGTGTTGATGCCCATGGGGGCTATGGCTGCAAGATATTTGAAGGTGTTTAGTGTCGCTAATCCGGCTTGGTTTTACATCCATGCCGCTACACAAACATCGGCTTATATCGTCGGTGTAGCCGGATGGGCTACCGGGCTCAAGCTCGGTAGTGATTCTGCTGGTATCACACACCAGTCTCATAGGAATATTGGGATCATCCTGTTTTCTTTTGCAACACTTCAGGTTTTTGCTTTGCTTTTGAGGCCTAAGCCTGACAACAAATACAGATTCTATTGGAACATCTACCATCATTCTCTTGGATACTCGATTATCATCTTGAGTATTATTAATGTGTACGAGGGGCTCGATATCTTGGACCCTGAGAAGAAGTGGAAGAATGCTTACACCGGGATACTTATCGCTTTGGGAGTTATTACAGTTATTTTGGAAGCTTTGACATGGTTTATTGTTTTAAAGAGGAAGAAAGAAGACAAAGTGACTCATGCAGGAGCTAATGGACATGCATAG 1152 46.61 MGKIFGVLFCILISNLVSSYAQQNCNSYAFSRNTIYTTCVSLPVLNSHLHWNYHSSNSTVDLAFRHAGSDTSQWVAWALNINGQGMVGAQALVAVTGSNGSVQAYTSSVTGYQTGLQPSQLSFDVPSITAERVRGDVLIYATLVLPSGGTRFNQVWQVGPVNNGAPGIHGLGADNRNSLGSVDFISGETGAGGSIGGSRQRRRNTHGVLNAVSWGVLMPMGAMAARYLKVFSVANPAWFYIHAATQTSAYIVGVAGWATGLKLGSDSAGITHQSHRNIGIILFSFATLQVFALLLRPKPDNKYRFYWNIYHHSLGYSIIILSIINVYEGLDILDPEKKWKNAYTGILIALGVITVILEALTWFIVLKRKKEDKVTHAGANGHA 383
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00625 383 Gene3D - 188 376 - -
Hean11g00625 383 CDD Cyt-b561-FRRS1-like 181 359 - -
Hean11g00625 383 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 8 370 - -
Hean11g00625 383 SMART 561-7 205 330 IPR006593 -
Hean11g00625 383 Pfam Eukaryotic cytochrome b561 206 330 IPR006593 -
Hean11g00625 383 ProSiteProfiles DOMON domain profile. 45 159 IPR005018 -
Hean11g00625 383 PIRSF UCP037471 2 383 IPR017214 -
Hean11g00625 383 FunFam Cytochrome b561 and DOMON domain-containing protein 184 374 - -
Hean11g00625 383 CDD DOMON-CIL1-like 36 186 IPR045265 -
Hean11g00625 383 Pfam Protein of unknown function (DUF568) 86 184 IPR045265 -
Hean11g00625 383 ProSiteProfiles Cytochrome b561 domain profile. 165 366 IPR006593 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00625 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
101046 Hean11g00625 Hean3g02159
402133 Hean11g00625 Hean4g04369
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:12204658 Hean3g02159 Hean-Chr3:120803324 dispersed
Hean Hean-Chr11:12088656 Hean11g00625 Hean-Chr11:12204658 proximal
Hean Hean-Chr11:12204658 Hean11g00628 Hean-Chr11:12219097 proximal
Hean Hean-Chr1:34965463 Hean11g00625 Hean-Chr11:12204658 transposed
Hean Hean-Chr11:12204658 Hean4g04369 Hean-Chr4:204463491 wgd