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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00631 ATGCTCCATCACATCCCACTTCCCCAAATTCAAAACATCATGTCTCTGACACCCACTGATCAAGATCAGATCACGAACATAAACCCTTCAGGTGAACTTCATGTCATTGTGGGCCCAATGTTTGCCGGTAAAACCACCGCCCTTCTTCGCAGGATCAAATCTGAAGCCACCAATGGCAGGAACATAGCAATGATAAAGTCAAACAAGGATACCCGATATGCGATAGATTCGGTTGTGACCCATGATGGAACAAAGTATCCATGTTGGGCACTGCCTGATTTGTTGTCTTTTAAACAGAAGCTTGGTGAAGAAGCTTATGGAAAGGTGGATGTAATTGGAATCGATGAAGCACAGTTCTTCGATGATCTTTACGAGTTTTGTTGTAAAGCTGCAGATCATGATGGGAAAACTGTCGTCGTTGCTGGTCTTGACGGCGATTATTTAAGACGAAACTTTGGTCCGGTGCTTGATATAGTACCTCTTGCTGATACGGTAACTAAATTAACCGCCAGATGTGAATTGTGCGGCAAAAAGGCCCATTTCACCTTCAGGAAGACTAACGAGACGAAAACTGAACTTATTGGTGGGGCGGATATGTATATGCCTGTTTGTCGTCAACATTATGTTAACGGGCATATCGTGAAGAAACCCGTTGTTTAA 660 43.48 MLHHIPLPQIQNIMSLTPTDQDQITNINPSGELHVIVGPMFAGKTTALLRRIKSEATNGRNIAMIKSNKDTRYAIDSVVTHDGTKYPCWALPDLLSFKQKLGEEAYGKVDVIGIDEAQFFDDLYEFCCKAADHDGKTVVVAGLDGDYLRRNFGPVLDIVPLADTVTKLTARCELCGKKAHFTFRKTNETKTELIGGADMYMPVCRQHYVNGHIVKKPVV 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00631 219 FunFam Thymidine kinase 169 211 - -
Hean11g00631 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 169 IPR027417 -
Hean11g00631 219 Gene3D - 169 210 - -
Hean11g00631 219 FunFam Thymidine kinase 27 168 - -
Hean11g00631 219 PANTHER THYMIDINE KINASE 27 216 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Hean11g00631 219 Gene3D - 23 168 IPR027417 -
Hean11g00631 219 PIRSF Tdk 28 217 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Hean11g00631 219 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 211 - -
Hean11g00631 219 Pfam Thymidine kinase 31 208 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Hean11g00631 219 ProSitePatterns Thymidine kinase cellular-type signature. 195 208 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00631 K00857 thymidine kinase [EC:2.7.1.21]
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Event-related genes

Select Gene_1 Gene_2 Event_name
402134 Hean11g00631 Hean4g04365
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:132712104 Hean11g00631 Hean-Chr11:12258499 transposed
Hean Hean-Chr16:160190562 Hean11g00631 Hean-Chr11:12258499 transposed
Hean Hean-Chr4:204402322 Hean11g00631 Hean-Chr11:12258499 transposed
Hean Hean-Chr11:12258499 Hean4g04365 Hean-Chr4:204401360 wgd