AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00678 ATGACTGCAATACCAGCTTCCAACAGCTGCTATTGCCATGTGCAATTGGTTAATCAGGGGATCACACCACACAATCTCAGCTTCTCAACATCTGTTTCTATTCAGAACCTAGTTACGCATGAACGCAGGCCGCATAAAATCGTTAAATTTCACAGGTTTCATGTTCAGATGCAGCAGACAGGATCACCAATGAAACCCGGCACCAACGGTCAACTGTCAAAGGTTTACACAAATGGTCGGCCGATATTGGGAAGCAAAGGTCAACCGATCACCATGGTTCCCATACATGAGGCGGTGAATAATAAACCGCTGTCAAAACAAAGATCACAAACTGCGAATGGACCGATACGAATCGGTAACGGAACAAGTCTTGTTAAACGAGAAGTCACACCGCCGCTAATTAAGTCCGTAGGAGTTAAACAGCATACGGGATTCCCACCGTCTGAAGAGTATAAGGTCTTGCCTTCGGATGAAAGTTTCCGATGGGCAAATGAGAATTATAACTCGGTACAACGATCAATAGACGTGTGGTCTTTTGTTCTTTCGTTGCGCGTTCGTGTTCTGTTAGACAATGCAAAGTGGACGTATCCCGGTTCTTTCACAGAGGAAAAACAGAAAAACCGAAGAAGAAAAACAGCTTCGTGGGTAAGAGAACGCGTGCTTCAACTCGGCCCGACTTTTATAAAACTCGGCCAGTTATTCTCGTCAAGATCGGATTTATTTCCGCATGAATTTGTCGATGAACTCGCCAAATTACAGGACAGAGTGCCAGCCTTCACAGCGGCAAAAGCAAAAGGTTTTATCGAGAAAGAATTAGGGGCTCCAGTTGATGTACTCTTTAGGGAATTCGAAGAACAACCGATTGCAGCTGCTAGTCTCGGTCAGGTGCATCGTGCGATATTACATAACGGGGAGAAAGTAGTCATTAAAGTTCAAAGACCTGGATTGAAGAAACTTTTTGACATCGATTTACGAAATTTAAAGTTAGTTGCAGAGTATTTTCAAAGAAGTGAAACTCTTGGTGGCCCCACAAGGGACTGGATGGGTGTCTACGATGAATGTAAAAAGATCTTGTACCAGGAGATTGATTATATACATGAAGGGAAAAACGCTGATAGATTCCGTCGAGATTTTCGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACTGCAACCAAGGTGCTAACGTTGGAGTATGTTCCAGGCATTAAAATCAATAACTTAGATGCGATAAAACAAAGGGGTTACAGTCGATCCCGAATATCTACACATGCCATTGAATCATACTTGATACAGATACTGAAAACCGGTTTCTTTCATGCTGATCCTCATCCTGGAAATCTTGCTATTGATGTTGATGAATCGTTAATCTACTACGATTTTGGTATGATGGGGGAGATTAAGTCGTTAACAAGAGAAAGATTGATGGATCTTTTTTATGCAATTTATGAAAAAGATGCAAAAAAGGTTATGAACAGTTTGATAAGCCTTGAAGCACTAAAGCCTACTGGAGACATGTCATCAGTTAGGAGATCTATTCAGTTCTTTTTGGATAATTCGCTAAATCAGTCAAATTATCAGGAGCAAACTTTGGCTGCAATAGGCGAGGACTTATTTTGTATAGCGACAGATCAACCTTTCCGGTTCCCTTCTTCCTTCGCTTTTCTAATTAGGGCATTTTCCACTCTTGAAGGAATTGGGTACTCGCTAGATCCAAATTTTTCATTTGTCAAGATTGCTTCACCATACATACAGGAGCTGTTAGATCTCAAAGAACAGCAGCCAAGTGGAACACAACTAGTTGCGGAAATGCGAAAACAAGCAGACGATGCAAGATCAAACACCATGTCAATGCCTTATAGAGTTCAACGGATTGAAGAGTTTGTTAAACAACTCGAAGTAGGCGACCTTAAACTTCGTGTCAGAGTTCTCGAGTCCGAGAGAGCAGCTCGGAAGGCAACAATGTTGCAAATGGCAACCATGTACACAGTTATAGGCGGTACGCTCATAAATCTTGGTGTCGCGTTTAGCACACTAGGCAAGCAACTTTTAGCAAAGGGATCATTTGTTGCTGCAGGTATTTTGATAGCACTGCTTATTAGGTCCATGCAAAGGGTGAAGAATCATGATAAATTTGAAAAGATGATTTAA 2163 41.75 MTAIPASNSCYCHVQLVNQGITPHNLSFSTSVSIQNLVTHERRPHKIVKFHRFHVQMQQTGSPMKPGTNGQLSKVYTNGRPILGSKGQPITMVPIHEAVNNKPLSKQRSQTANGPIRIGNGTSLVKREVTPPLIKSVGVKQHTGFPPSEEYKVLPSDESFRWANENYNSVQRSIDVWSFVLSLRVRVLLDNAKWTYPGSFTEEKQKNRRRKTASWVRERVLQLGPTFIKLGQLFSSRSDLFPHEFVDELAKLQDRVPAFTAAKAKGFIEKELGAPVDVLFREFEEQPIAAASLGQVHRAILHNGEKVVIKVQRPGLKKLFDIDLRNLKLVAEYFQRSETLGGPTRDWMGVYDECKKILYQEIDYIHEGKNADRFRRDFRNIKWVRVPQVFWDYTATKVLTLEYVPGIKINNLDAIKQRGYSRSRISTHAIESYLIQILKTGFFHADPHPGNLAIDVDESLIYYDFGMMGEIKSLTRERLMDLFYAIYEKDAKKVMNSLISLEALKPTGDMSSVRRSIQFFLDNSLNQSNYQEQTLAAIGEDLFCIATDQPFRFPSSFAFLIRAFSTLEGIGYSLDPNFSFVKIASPYIQELLDLKEQQPSGTQLVAEMRKQADDARSNTMSMPYRVQRIEEFVKQLEVGDLKLRVRVLESERAARKATMLQMATMYTVIGGTLINLGVAFSTLGKQLLAKGSFVAAGILIALLIRSMQRVKNHDKFEKMI 720
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00678 720 CDD ABC1-ADCK3-like 251 498 - -
Hean11g00678 720 Pfam ABC1 atypical kinase-like domain 251 497 IPR004147 -
Hean11g00678 720 SUPERFAMILY Protein kinase-like (PK-like) 253 590 IPR011009 -
Hean11g00678 720 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 114 652 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00678 K03688 ubiquinone biosynthesis protein
Hean11g00678 K08869 aarF domain-containing kinase
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
402142 Hean11g00678 Hean4g04339
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:13788558 Hean14g02399 Hean-Chr14:128067160 dispersed
Hean Hean-Chr17:9057377 Hean11g00678 Hean-Chr11:13788558 transposed
Hean Hean-Chr3:151784871 Hean11g00678 Hean-Chr11:13788558 transposed
Hean Hean-Chr8:20360823 Hean11g00678 Hean-Chr11:13788558 transposed
Hean Hean-Chr11:13788558 Hean4g04339 Hean-Chr4:204070381 wgd