AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00764 ATGTCTTCCTTACTTCCTATTTCAACCACCCTCTCTGCCTTTCCTTCCACAACCACCCAACTAGCCTTCAAGGCTCGAACCAATCAAACCCAAGGGTTCAGAGTCTCATGCAACCATGCACAAGACGAACAAAATGACAACAAAATCATACTCCCAGAATCCCAAAAGCTGGTACTACCCAATGTAGACCGTAGGAACCTGTTGGTAGGGCTCGGCAGCCTGTACACAGCCGTGAACCTGCCTGCGGCCATGGCTGCGCCCATTACGTCCCCGGACATCACGTCCATATGCAAGGACGCGAACTCCGGCATTGGGGACATCGTGGGTGCGGTCAGGACACGGAAATGCTGCCCGCCGAGCCTCGGAAAGACGATCAAACCCTTCGTGTTTCCAACTGAAACCACGGTGAGGAAAAGATGGCCCGCTCACGCGGGCACTAAGAAGCAGGTGGACGATTATAGACGAGCCATCCAAGCCATGCGAGATCTTCCAGATGATCACCCGCACAGCTTCGTCAGCCAAGCTAAAATCCATTGTGCTTACTGCAACGGTGGTTACACTCAAGTCGATAGCGGTTTCCCCGAAATCGACATTCAGATCCACAACTCATGGCTCTTCTTTCCCTTCCACCGTTGGTACCTATATTTCTACGAAAGAATCCTCGGAAAGTTGATTAACGAGCCAAGTTTCGCGTTACCGTTCTGGAAATGGGACGACCCAGCCGGAATGCCGATGCCAGAAATGTTTGTGGCCGAGACTGTTGATGGCCAGCCGAACTCGTTGTATGATGTGTACCGCGACTCGCGTCATCTCCCACCAGCAATTGTGGATCTGGACTTTGATGGTAAGGATAAGAACATTCCAGATCAACAACAAAGAGCTTGCAATCTTGCAACAGTGTACCGAGATTTGGTCCGAAACGGAGGTGATACACTGAGTTTCTTCGGGGGCGAATACGTTGCTGGTGATCAACCCGTTGCTAATGGTGCGAAGTCGGTCGGATCAGTGGAAGCTGGTAGTCACACCGCGGTTCATCGATGGGTAGGCGACACAAACCAGCCGAATAATGAGGATATGGGCAACTTCTACTCTGCGGGGTATGACCCTGTGTTCTACTGCCATCATGCAAACGTTGACCGTACGTGGAAGCTATGGAAGGATTTAGGTCTTCCGGGACACGTGGAACCGACGTCTCCGGACTGGTTAAACGCGTCGTATGTGTTCTACGACGAGAATCAGGAGCTTGTGCGCGTGTATAACAAAGACTGCGTGGACATAGGGAAACTCAAGTATACTTTCCTTGAGAACTCCAAGGAAGTGTTCCCGTGGCGCAAGAGCCGACCGGCAAGACGTAGCAAAACCGACCAAGTTGCGTCCACGGGAGACGTGCCAACGGTGGACCAATTGAAGTTCCCGGTGAGTCTAGAAAATATCCTGAAGGTCCGTGTGAAGAGGCCCGCGGTGAACAGGAGTAAAGAGGACAAGGCGACAGCCAACGAGATTTTGTTGGTTAACGGAATAAAGTTCGATAGCGATAAGTTTGTAAAGTTCGATGTGTTTGTTAATGACAAGGTTAAAGACGGTGTTTTTACCACGCCTTGTGATCCTGAGTACGCAGGTGGTTTTGCACAGATTCCGCACAATGATATGAAGAAGATGTCTATGTCGAGTGCGGGTAGGTTTGGGCTGACTGAGCTGTTGGAGGACACGAATACCGAAGGCGAAGAGTATGCAACGGTGACATTGGTGCCGAGGGTAGGTTGCGAAGATCTCACTATTGGCGAAATCTCAATCAAGTTGATTCCTCTAGCGTAA 1815 50.74 MSSLLPISTTLSAFPSTTTQLAFKARTNQTQGFRVSCNHAQDEQNDNKIILPESQKLVLPNVDRRNLLVGLGSLYTAVNLPAAMAAPITSPDITSICKDANSGIGDIVGAVRTRKCCPPSLGKTIKPFVFPTETTVRKRWPAHAGTKKQVDDYRRAIQAMRDLPDDHPHSFVSQAKIHCAYCNGGYTQVDSGFPEIDIQIHNSWLFFPFHRWYLYFYERILGKLINEPSFALPFWKWDDPAGMPMPEMFVAETVDGQPNSLYDVYRDSRHLPPAIVDLDFDGKDKNIPDQQQRACNLATVYRDLVRNGGDTLSFFGGEYVAGDQPVANGAKSVGSVEAGSHTAVHRWVGDTNQPNNEDMGNFYSAGYDPVFYCHHANVDRTWKLWKDLGLPGHVEPTSPDWLNASYVFYDENQELVRVYNKDCVDIGKLKYTFLENSKEVFPWRKSRPARRSKTDQVASTGDVPTVDQLKFPVSLENILKVRVKRPAVNRSKEDKATANEILLVNGIKFDSDKFVKFDVFVNDKVKDGVFTTPCDPEYAGGFAQIPHNDMKKMSMSSAGRFGLTELLEDTNTEGEEYATVTLVPRVGCEDLTIGEISIKLIPLA 604
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00764 604 PIRSF PPO-plant 1 601 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Hean11g00764 604 PRINTS Tyrosinase copper-binding domain signature 201 218 IPR002227 GO:0016491(InterPro)
Hean11g00764 604 PRINTS Tyrosinase copper-binding domain signature 340 351 IPR002227 GO:0016491(InterPro)
Hean11g00764 604 PRINTS Tyrosinase copper-binding domain signature 232 237 IPR002227 GO:0016491(InterPro)
Hean11g00764 604 PRINTS Tyrosinase copper-binding domain signature 367 385 IPR002227 GO:0016491(InterPro)
Hean11g00764 604 Pfam Polyphenol oxidase middle domain 397 448 IPR022739 GO:0004097(InterPro)
Hean11g00764 604 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 368 379 IPR002227 GO:0016491(InterPro)
Hean11g00764 604 SUPERFAMILY Di-copper centre-containing domain 114 433 IPR008922 -
Hean11g00764 604 ProSitePatterns Tyrosinase CuA-binding region signature. 201 218 IPR002227 GO:0016491(InterPro)
Hean11g00764 604 Gene3D - 86 439 IPR008922 -
Hean11g00764 604 Pfam Protein of unknown function (DUF-B2219) 471 600 IPR022740 GO:0004097(InterPro)
Hean11g00764 604 Pfam Common central domain of tyrosinase 169 387 IPR002227 GO:0016491(InterPro)
Hean11g00764 604 PANTHER TYROSINASE FAMILY MEMBER 62 568 IPR050316 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00764 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
101056 Hean11g00764 Hean3g02234
402154 Hean11g00764 Hean15g03909
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:17170838 Hean15g03906 Hean-Chr15:148471990 dispersed
Hean Hean-Chr11:17062271 Hean11g00764 Hean-Chr11:17170838 proximal
Hean Hean-Chr11:17170838 Hean11g00765 Hean-Chr11:17210331 tandem