AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00913 ATGGCGAATCGGAATTTGGAGAAATTGGCATCGATCGACGCTCAGTTGAGGCTTTTGGTTCCCGGAAAAGTTTCAGAGGATGATAAGCTTATTGAGTATGATGCGTTGCTGTTGGATAAGTTTCTAGATATTCTTCAGGATTTACATGGAGAAGATCTTAAGGAAACGGTTCAAGAATGCTATGAGCTTTCTGCTGAATACGAGGGAAAGCGTGACCCGAAGAAGCTCGAGGAGCTCGGAAGTGTGTTGACCAGTTTAGATCCAGGGGATTCGATTGTCATTGCAAAAGCTTTCTCTCACATGCTTAATTTAGCCAATCTGGCTGAAGAGGTTCAGATCGCTTTCCGTAGAAGGATCAAGCTGAAAAAGGGTGATTTTGCCGATGAGGCTAATGCGACAACCGAATCGGATATTGAAGAAACTCTTAAGAAGCTTGTGTATAAGCTTAACAAGTCCCCTGAAGAGGTTTTTGATGCACTCAAAAATCAAACTGTTGACTTGGTGTTGACCGCTCATCCGACTCAATCGGTCCGCAGATCTTTACTTCAGAAGCATGGAAGGATCCGTAACTGTCTGGCCCAGTTATATGCTAAAGACATCACTCCCGATGACAAGCAAGAACTCGATGAGGCCTTACATCGCGAAATCCAAGCTGCTTTCCGTACCGATGAGATCAGAAGGACCCAACCGACACCGCAAGATGAAATGCGAGCTGGAATGAGTTACTTTCATGAAACAATATGGAAGGGTGTTCCGAAGTTCTTACGGCGTGTCGACACCGCTCTAAAGAATATCGGGATTAATGAACGTGTTCCGTATAATGCACCTCTTATTCAGTTTTCTTCATGGATGGGTGGTGACCGTGACGGTAATCCAAGAGTGACTCCTGAGGTAACAAGGGATGTTTGCTTACTAGCAAGAATGATGGCTGCAAACATGTACTTTTCGCAGATCGAGGATCTAATGTTTGAGATGTCCATGTGGCGTTGTACCGATGAACTACGCGTTCGAGCTGAAGACCTCTTTCGAACAGCAAGGAGAGATGTAAAGCACTACATAGAGTTCTGGAAACAGGTTCCTCCCACTGAACCTTATCGTGTAATTCTCGGTGATGTAAGGGATAAGTTATATAATACACGTGAACGTGCTCGCCATTTGTTAGCGCATGATATATCCGACATTCCAGAAGAGGCGGTTTACACCAATGTTGAACAGTTCCTAGAACCCCTGGAGCTATGTTACCGATCACTATGTGCGTGCGGTGACCGTGTGATTGCTGACGGAAGCCTTCTAGATTTTCTACGACAGGTGTCGACATTCGGGCTGTCACTAGTGAAACTCGATATACGACAAGAATCCGATCGCCACACAGACGTCCTCGACGCAATCACTCAACATCTGGAAATCGGGTCCTACCGTGAATGGTCTGAAGAAAAACGTCAAGAATGGCTTCTAGCTGAACTCAGGGGAAAACGTCCGCTTTTCGGTTCCGATCTCCCGAAAACCGAGGAAATTAAGGATGTTTTGGACACGTTCGGTGTGTTGGCAGAACTCCCGGCTGATTGTTTCGGTGCTTATATCATCTCAATGGCCACGTCACCGTCTGACGTCCTCGCTGTCGAGCTTCTTCAACGCGAATGCCACGTAAAACAACCGTTACGCGTGGTCCCGCTTTTTGAAAAACTTGCTGATCTGGAAGCTGCCCCTGCCGCTATGGCCCGTCTTTTCTCAGTCGATTGGTACAAAAACCGAATTAACGGGAAACAAGAAGTCATGATCGGGTACTCCGATTCCGGAAAAGACGCTGGGCGGTTTTCTGCTGCGTGGCAGCTTTACAAAGCTCAAGAAGAGCTGAAAAACGTTGCAAAAGAGTTTGGAGTTAAACTTGTTATGTTTCACGGGCGTGGTGGGACCGTGGGCCGAGGTGGTGGGCCCACCCATCTTGCTATCCTGTCCCAACCTGCTGAGACCATTCAGGGGTCGTTAAGAGTCACAGTTCAGGGGGAGGTTATTGAGCAATCGTTTGGTGAGGAACATTTGTGTTTTAGAACGCTGCAACGATTCTGTGCAGCTACACTTGAGCACGGAATGAACCCGCCGATCTCACCGAGGCCCGAGTGGCGTGAACTTATGGACCAGATGGCGGTTGTTGCAACCGAACAGTATCGTTCTATTGTGTTCCAGGAACCACGTTTTGTCGAGTATTTCCGCCTTGCCACACCAGAAATGGAGTACGGGCGTATGAATATCGGAAGTCGCCCATCAAAACGAAAACCGAGTGGCGGCATAGAATCACTTCGAGCCATTCCATGGATCTTTGCATGGACCCAAACCAGGTTCCATCTCCCTGTTTGGCTCGGGTTCGGTGCTGCATTCAAACAAGTCATTCAAAAAGACAGCAAGAATCTTCAAATGCTTCAAGAAATGTACAAAAAATGGCCTTTCTTTCGGGTCACCATCGATTTAGTTGAAATGGTGTTTGCTAAAGGAGACCCCGGCATTGCTGCCTTGAACGACAAGCTACTTGTTTCTGAAGACTTATGGCCCTTTGGAGAATCGTTAAGAGCTAACTATGAAGAAACCAAAGATTATCTCCTCAAGATTGCTGGACACAAGGACCTGCTCGAGGGCGATCCCTACTTGAAACAAAGACTTAAGTTGCGTGATTCATACATCACAACCTTAAACGTTTGTCAAGCGTATACTCTAAAACGGACCCGTGACCCGAATTATCATGTGACCTTAAGGCCGCATATTTCGAAAGAATATGCTGAGCCAAGCAAACCGGCTGATGAACTTATCCACTTGAACCCAACCAGTGAGTATGCCCCGGGTCTGGAGGACACACTCATCTTGACCATGAAGGGTATTGCTGCTGGAATGCAGAACACCGGTTAA 2898 47.0 MANRNLEKLASIDAQLRLLVPGKVSEDDKLIEYDALLLDKFLDILQDLHGEDLKETVQECYELSAEYEGKRDPKKLEELGSVLTSLDPGDSIVIAKAFSHMLNLANLAEEVQIAFRRRIKLKKGDFADEANATTESDIEETLKKLVYKLNKSPEEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRIRNCLAQLYAKDITPDDKQELDEALHREIQAAFRTDEIRRTQPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANMYFSQIEDLMFEMSMWRCTDELRVRAEDLFRTARRDVKHYIEFWKQVPPTEPYRVILGDVRDKLYNTRERARHLLAHDISDIPEEAVYTNVEQFLEPLELCYRSLCACGDRVIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTDVLDAITQHLEIGSYREWSEEKRQEWLLAELRGKRPLFGSDLPKTEEIKDVLDTFGVLAELPADCFGAYIISMATSPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAMARLFSVDWYKNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELKNVAKEFGVKLVMFHGRGGTVGRGGGPTHLAILSQPAETIQGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPEWRELMDQMAVVATEQYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVIQKDSKNLQMLQEMYKKWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWPFGESLRANYEETKDYLLKIAGHKDLLEGDPYLKQRLKLRDSYITTLNVCQAYTLKRTRDPNYHVTLRPHISKEYAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 965
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00913 965 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 965 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 FunFam Phosphoenolpyruvate carboxylase 1 308 443 - -
Hean11g00913 965 Pfam Phosphoenolpyruvate carboxylase 34 965 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 33 965 IPR015813 GO:0003824(InterPro)
Hean11g00913 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Hean11g00913 965 Gene3D Phosphoenolpyruvate-pyruvate domain 308 443 - -
Hean11g00913 965 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 27 965 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0008964(PANTHER)|GO:0009507(PANTHER)|GO:0015977(InterPro)|GO:0048046(PANTHER)|GO:0048366(PANTHER)
Hean11g00913 965 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 PRINTS Phosphoenolpyruvate carboxylase signature 763 789 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Hean11g00913 965 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00913 K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
100836 Hean10g02673 Hean11g00913
101063 Hean11g00913 Hean13g00302
402161 Hean11g00913 Hean15g03958
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:22022902 Hean8g00640 Hean-Chr8:13554575 dispersed
Hean Hean-Chr17:120846077 Hean11g00913 Hean-Chr11:22022902 transposed
Hean Hean-Chr1:16657474 Hean11g00913 Hean-Chr11:22022902 transposed
Hean Hean-Chr5:101748105 Hean11g00913 Hean-Chr11:22022902 transposed
Hean Hean-Chr10:144458148 Hean11g00913 Hean-Chr11:22022902 wgd
Hean Hean-Chr11:22022902 Hean13g00302 Hean-Chr13:10616976 wgd
Hean Hean-Chr11:22022902 Hean15g03958 Hean-Chr15:152392513 wgd
Hean Hean-Chr11:22022902 Hean3g02321 Hean-Chr3:127227805 wgd