AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00918 ATGGCCGATGAGAAAGAAGAGAAGAAGAACAAGAAGAGCAAAAGCAAGAAATGGGGTTTTCTCTCTCGAATTTGGAACGCATTGTTTGGATTACGTGGTGATGATTTTGAGAAGAGGCTGCAGTATATTTCTAAAGAAGAAGCTACTCTTATTTCTAGGATGAAAAGAAGATCTTTTAGATGGAGAACAACTGCTAGAAATTTAATCATCTTTTCTGTTCTTCTTGAGATGGTTGCAGTGGGTTATGCTATAATGACAACAAGAACAGTGGATATGGATTGGAGAACGAGATCGTTACGGGTTCTACCTATGTTTCTTTTGCCTGCTTTGTCGTTCGGTTTGTATTATGGGCTTTCGAGTTTCACTAAATTTTGTGATCGAAGGGATCAGAAGACGTTAGATGGGCTTCGAGAAGAAAGGCAAGCAAAAATCGACGAGCTTAAAGAGAGAACTAATTATTACATCACTCAGCAGCTCATTCAGAAATATGATTCGGATCCAGCGGCAAAAGCGGCTGCTGCAACTGTTCTTGCATCGAAACTGGGTGCAGATGCGGGCCTGAAAGTGTTTCTTGGAGACGAACGACAACCAGACGCACATTCCACAGGGAAAAGCAGTGATGTTGACCTCCAACAAACTAGCGGTCTCAGGAAACGAAACCAAACAAACCCTAAATCTCCTGGAAGCAATCCAGGCCATCATGTCGGTAAAGAAACACCTCAATTTGGCGGAAATGAGGTTCCCGGAAATTCGCCACATGGACAGCTTGTTGTCGAGCATCATAATCCCGCAGCTTCAGGCGCTCAAGATGGTGGTTGGATCGCTAGAATTGCCGCATTGCTAGTAGGCGAGGACCCCACACAGTCGTACGCACTTATATGTGGAAATTGCCATATGCATAATGGGCTTGCGAGAAAGGAGGAGTTCCCGTTCATCACGTACTATTGTCCTCATTGTCATGCTTTGAATAAACCGAAAAATTCTGTACTTCCGTCGGATAAAATGTCTCCTGTTACGGAATCTCCAAAAGTAGCAGGTGCAGCGGATGTTAAGTTGACCGAACAAAGTAACGAGTCAACGGGTGAGAAAGTATCTGGTGCTAGCAGTCCCATGGTAGCTGCAGTGGAAGTGAAAGAAGCAAATGAGAAAATAGTTGACTGA 1161 43.93 MADEKEEKKNKKSKSKKWGFLSRIWNALFGLRGDDFEKRLQYISKEEATLISRMKRRSFRWRTTARNLIIFSVLLEMVAVGYAIMTTRTVDMDWRTRSLRVLPMFLLPALSFGLYYGLSSFTKFCDRRDQKTLDGLREERQAKIDELKERTNYYITQQLIQKYDSDPAAKAAAATVLASKLGADAGLKVFLGDERQPDAHSTGKSSDVDLQQTSGLRKRNQTNPKSPGSNPGHHVGKETPQFGGNEVPGNSPHGQLVVEHHNPAASGAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKNSVLPSDKMSPVTESPKVAGAADVKLTEQSNESTGEKVSGASSPMVAAVEVKEANEKIVD 386
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00918 386 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 273 323 IPR019273 -
Hean11g00918 386 MobiDBLite consensus disorder prediction 203 229 - -
Hean11g00918 386 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 13 364 IPR040115 GO:0071782(PANTHER)|GO:0071786(PANTHER)|GO:0071786(InterPro)
Hean11g00918 386 MobiDBLite consensus disorder prediction 352 366 - -
Hean11g00918 386 MobiDBLite consensus disorder prediction 195 257 - -
Hean11g00918 386 MobiDBLite consensus disorder prediction 331 370 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00918 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
100832 Hean10g02671 Hean11g00918
101068 Hean11g00918 Hean13g00296
101069 Hean11g00918 Hean13g00299
101070 Hean11g00918 Hean3g02328
402164 Hean11g00918 Hean15g03963
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:22369997 Hean13g00299 Hean-Chr13:10049890 dispersed
Hean Hean-Chr3:164058202 Hean11g00918 Hean-Chr11:22369997 transposed
Hean Hean-Chr10:144359678 Hean11g00918 Hean-Chr11:22369997 wgd
Hean Hean-Chr11:22369997 Hean13g00296 Hean-Chr13:10030166 wgd
Hean Hean-Chr11:22369997 Hean15g03963 Hean-Chr15:153079660 wgd
Hean Hean-Chr11:22369997 Hean3g02328 Hean-Chr3:127547546 wgd