AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00926 ATGGATTCAGGGATATTAGATGCGGATAAAATAAGCAAAGGGAAGAGTAAGTGGGGTGAAGGTAATAAAGTTTACACCAGAAGGCCCAAAACAACCACCACCAACGCCGCCGTTGCCGCCAGCGTCGATGGCGGCGGCAGCGGCAGCTCTTCCCCAACCCCTACCGCCATCGTCACCGCTACCTCTCCACCTACCACCACAAATAACGATCAAACCCTAGCGGCTGAGCTCGTAAATTCGGAAAATAGACGAGCTTTATCGCCGGTAGTAGAGGTATCAGATGATCACTCGGTTGAAAATCGAGAGTCTTGCGAAAACGGGGTGGTAAAACTAAAACCGGTTGTTACGGTGGTGGATGGTCGGGTGAGGATTAATATAAAAGCTGCGAAAACGAAGGATGAGATTATGGAGCTTAGGGAGACGATTAAAACGGAGCTTGAACGAGTGCGAAGTTTAGCTCAAAAGGTTGAAGAGAAAGAAGCTGAGTTAACTGCGTTTTCGACGGTTGTTGGTGTCACGAACAGTGAGACTTACAATCATTCGCAGTATTTGGGCGATGATGTAGTTGATAGGAGGGCTTTGGTTAGAGTTAATTCGGAAATGGGTACCGAGTTCATGGACCGTAGAGCTTTGACGAGGATAAATTCGGAAGCTGGTTCGGTTACGAATAGTGACGGAAGGCCGTTTAGACAGTTAAGTGTATCGGTTATGAATAGTAACCATGGAGTTGGTGAGTTTACGGAGAAAGAGAAGAGGACACCGAAGGCGAATCAGTATTATCGGAATTCCGATTTTCTTCTCGGTAAAGATAGATTACCGCCCGAAACCAACAAGCGGCGTAAATCCAACAGCGGAAGGAAACATAGCAAGGAATCAGATTACGTGCGGAATCATACGTTCAGGAGTTGCAACAATTTGCTGCAGAGGTTAATGAAGCACAAATTTGGTTGGGTGTTTAACGTACCGGTTAACGCTAAACAGTTAGGGCTTCATGATTACCATGACATTATCAAACACCCAATGGATTTGGGCACGATCAAGAGCCGTCTCGCGCAAAACTTCTACAAGTCTCCGATGGAATTTGCGGATGACGTTAGACTCACGTTTCGTAACGCGATGACGTATAATCCGAAAGGGCAAGATGTGCATGTTATGGCAGAGCAGTTATCAAATATTTTCGAAGAAAGATGGGCTGTCATTGAATCGGAATCGAATCACGTTTTGAGATATGGAATGATTTACGACGCGAACACTCCGACTCCCACTTCAAGAAAGGTTCCTCATTTCGCGCATGCGCCTTCGAGAATGCTGTACAGGTCGGAATCGTTGAACTTGCCTGTGATGACTAGTCAGCCGCAGCAGCCCTCGAAATTTGTGCCAGCGGTTATTAGGACACCTGCACCGAAGAAACCGAAAGCAAAGGACCCTAATAAGAGGAACATGACGTACGAAGAGAAGCAAAAGCTTAGTACAAATCTTCAGAGTTTGCCGTCTGAAAAGCTTGATAGTATCGTCCAGATTATCAAAAAGAACACCTCGCTTTCTCAACATGATGATGAGATTGAGGTCGATATCGATAGTGTTGATATCGAAACCCTTTGGGAACTCGATAGGTTTGTCATGAATTATCGAAAGAATTTGAGCAAGCATAAACGGAAAGCTGCGCTTGCTCAACAAGCAAGGGAAGAAGCCGGTGATGTGAATCGGGACGCGAACCCATCAACATCCCTTCCGGAGGCCCCCAATGAAAATAGAACAAATGAACAGACCCCTCTTAATCAAGGAGGGAGAGGAGATAATGCCAGTAGTTCAAGCAGTTCTAGCAGTGATTCTGGATCGTCTTCAAGCGATTCGGATAGTGATAGTTCATCTGAAGATGGATCAGATGCGGGTCATTCACCTAGAAACTGA 1911 45.89 MDSGILDADKISKGKSKWGEGNKVYTRRPKTTTTNAAVAASVDGGGSGSSSPTPTAIVTATSPPTTTNNDQTLAAELVNSENRRALSPVVEVSDDHSVENRESCENGVVKLKPVVTVVDGRVRINIKAAKTKDEIMELRETIKTELERVRSLAQKVEEKEAELTAFSTVVGVTNSETYNHSQYLGDDVVDRRALVRVNSEMGTEFMDRRALTRINSEAGSVTNSDGRPFRQLSVSVMNSNHGVGEFTEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRRKSNSGRKHSKESDYVRNHTFRSCNNLLQRLMKHKFGWVFNVPVNAKQLGLHDYHDIIKHPMDLGTIKSRLAQNFYKSPMEFADDVRLTFRNAMTYNPKGQDVHVMAEQLSNIFEERWAVIESESNHVLRYGMIYDANTPTPTSRKVPHFAHAPSRMLYRSESLNLPVMTSQPQQPSKFVPAVIRTPAPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDSIVQIIKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVMNYRKNLSKHKRKAALAQQAREEAGDVNRDANPSTSLPEAPNENRTNEQTPLNQGGRGDNASSSSSSSSDSGSSSSDSDSDSSSEDGSDAGHSPRN 636
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00926 636 Gene3D - 474 554 IPR038336 -
Hean11g00926 636 Gene3D - 266 409 IPR036427 GO:0005515(InterPro)
Hean11g00926 636 Pfam Bromodomain 303 387 IPR001487 GO:0005515(InterPro)
Hean11g00926 636 SMART bromo-6 296 402 IPR001487 GO:0005515(InterPro)
Hean11g00926 636 MobiDBLite consensus disorder prediction 1 68 - -
Hean11g00926 636 CDD Bromo-plant1 299 397 IPR037377 -
Hean11g00926 636 ProSiteProfiles NET domain profile. 471 551 IPR027353 -
Hean11g00926 636 Coils Coil 128 162 - -
Hean11g00926 636 PANTHER OSJNBA0053K19.4 PROTEIN 23 628 - -
Hean11g00926 636 Coils Coil 540 560 - -
Hean11g00926 636 MobiDBLite consensus disorder prediction 554 636 - -
Hean11g00926 636 MobiDBLite consensus disorder prediction 569 621 - -
Hean11g00926 636 MobiDBLite consensus disorder prediction 1 24 - -
Hean11g00926 636 ProSiteProfiles Bromodomain profile. 311 383 IPR001487 GO:0005515(InterPro)
Hean11g00926 636 MobiDBLite consensus disorder prediction 271 293 - -
Hean11g00926 636 Pfam Bromodomain extra-terminal - transcription regulation 481 541 IPR027353 -
Hean11g00926 636 MobiDBLite consensus disorder prediction 26 68 - -
Hean11g00926 636 MobiDBLite consensus disorder prediction 267 293 - -
Hean11g00926 636 PRINTS Bromodomain signature 346 364 IPR001487 GO:0005515(InterPro)
Hean11g00926 636 PRINTS Bromodomain signature 364 383 IPR001487 GO:0005515(InterPro)
Hean11g00926 636 PRINTS Bromodomain signature 314 327 IPR001487 GO:0005515(InterPro)
Hean11g00926 636 PRINTS Bromodomain signature 330 346 IPR001487 GO:0005515(InterPro)
Hean11g00926 636 SUPERFAMILY Bromodomain 279 403 IPR036427 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00926 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
101074 Hean11g00926 Hean3g02334
402166 Hean11g00926 Hean15g03967
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:22569632 Hean17g03934 Hean-Chr17:167951362 dispersed
Hean Hean-Chr11:22569632 Hean15g03967 Hean-Chr15:153503159 wgd
Hean Hean-Chr11:22569632 Hean3g02334 Hean-Chr3:127580480 wgd