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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00954 ATGGCTTCCTCTCTCTACATTTTCCTCACTGTGTTCTTCACTGTGTTTTGTTTTTCACATGCAAATAACTTCAATGTTGGCGGGAAAGATGGGTGGACTCTGCACCCTTCTGAAAGCTACAGTCAATGGTCAAGCAGGTTGAGGTTTGTCATCAACGACAATCTCCATTTTAAGTATGATGGTGGGACTGATTCTGTATTGGAGGTTAGCAAAGGCGATTATGATGGCTGCAACACGAATAGTCCTATTACTAAGCTTACTGGTGGAGATTCTACCTTTAGTTTGAACCGTCCTGGGCCGTTTTATTTTATCAGTGGTAATAAGTCGAATTGTGTTCAAGGTCAGAAGTTGACGGTGGTTGTTATTACGCCGAAATCGACGAAAACACCGCCTGCTGTTGCTCCAACTCCGCCCGGCTCGCCACCGGGAACATCCACACCAGGTAGTCCTGGTGCTCCTCCGGGCGGAGGTGGAGGTGGCTCAACTTCTCCACCAGGTAGTCCCGGAGCCTCACCTGGTGGAGGAGGGTCATCATCTCCACCAGGTAGCCCTGGAGCATCACCTGGTGGTGGTGGAGGAGGCTCTACTCACCCAGGTAGCCCCGGGTCATCACCTGGTGGTGGTGGGGGAGGAGGAGGCTCTACTCACCCAGGTAGCCCTGGCGCTTCACCTGGTGGAGGTGGAGGTGGAGGTGGCTCAACCCCAGGTAGTCCCGGGGCCTCACCTGGCAGAGGAGGAGGGTCATCATCTCCACCAGGTAGCCCCGTAGCATCACCTGGTGGTGGTGGAGGAGGCTCTACTCACCCAGGTAGCCCCGGGTCATCACCTGGTGGTGGTGGGGGAGGAGGAGGCTCTACTCACCCAGGTAGCCCTGAGGCTTCACCTGGTGGAGGTGGCTCAACCCCAGGTAGTCCCGGGGCATCACCTGGTGGAGGCGGCGGATCTTCTCACCCAGGTAGCCCCGAGGCTTCACCCGGTGGAGGAGGAGGGTTAACCCCAGGTAGTCCCGGGGCATCACCTGGTGGAGGGGGAGGCGCATCTTCTCCACTAGGTAGTCCCGGAGCTTCACCAAGTGGAGGGGGTATCTCTACTTCTCCCGCTGGTAGTCCAACGGGTTCACCAGGTGGTGGAACCTCCTCTCCTGTCGGTAGTCCAGCAGGTTCACCCGGTGGAGGAGCCCTATCTCCATCTGGTAGTCCAGGGGCTTCACCAGGTGGAGGCACCTCTTCTCCTGGTGGAAGTCCAGCAGCTTCACCAGGTGGAGCCGCGTCTACTCCCATGGGTAATCCAGCGGATACTCCGGGCGGAGCTCCGTCTTCTCCAACTGGGAACCCGGCGGATACTAATGGGAATGGAAACCAGAATGGATCGGCAACAAGTTCAGGTGTTTGTGCAATCTTGACTATGCCAATTGCCATGATAATATTTATGCTTGGGTGGGCTTATTAA 1449 56.38 MASSLYIFLTVFFTVFCFSHANNFNVGGKDGWTLHPSESYSQWSSRLRFVINDNLHFKYDGGTDSVLEVSKGDYDGCNTNSPITKLTGGDSTFSLNRPGPFYFISGNKSNCVQGQKLTVVVITPKSTKTPPAVAPTPPGSPPGTSTPGSPGAPPGGGGGGSTSPPGSPGASPGGGGSSSPPGSPGASPGGGGGGSTHPGSPGSSPGGGGGGGGSTHPGSPGASPGGGGGGGGSTPGSPGASPGRGGGSSSPPGSPVASPGGGGGGSTHPGSPGSSPGGGGGGGGSTHPGSPEASPGGGGSTPGSPGASPGGGGGSSHPGSPEASPGGGGGLTPGSPGASPGGGGGASSPLGSPGASPSGGGISTSPAGSPTGSPGGGTSSPVGSPAGSPGGGALSPSGSPGASPGGGTSSPGGSPAASPGGAASTPMGNPADTPGGAPSSPTGNPADTNGNGNQNGSATSSGVCAILTMPIAMIIFMLGWAY 482
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00954 482 Pfam Plastocyanin-like domain 32 115 IPR003245 GO:0009055(InterPro)
Hean11g00954 482 SUPERFAMILY Cupredoxins 21 122 IPR008972 -
Hean11g00954 482 MobiDBLite consensus disorder prediction 401 415 - -
Hean11g00954 482 CDD OsENODL1-like 23 122 IPR041846 -
Hean11g00954 482 PANTHER BLUE COPPER PROTEIN 13 147 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Hean11g00954 482 MobiDBLite consensus disorder prediction 126 458 - -
Hean11g00954 482 MobiDBLite consensus disorder prediction 435 458 - -
Hean11g00954 482 ProSiteProfiles Phytocyanin domain profile. 22 123 IPR003245 GO:0009055(InterPro)
Hean11g00954 482 MobiDBLite consensus disorder prediction 130 149 - -
Hean11g00954 482 MobiDBLite consensus disorder prediction 164 184 - -
Hean11g00954 482 FunFam Early nodulin-like protein 1 21 126 - -
Hean11g00954 482 Gene3D - 20 127 IPR008972 -
Hean11g00954 482 MobiDBLite consensus disorder prediction 351 385 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00954 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
101086 Hean11g00954 Hean13g00262
101087 Hean11g00954 Hean3g02377
402170 Hean11g00954 Hean15g04009
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:24279831 Hean3g02377 Hean-Chr3:128711934 dispersed
Hean Hean-Chr11:24279831 Hean13g00262 Hean-Chr13:8309386 wgd
Hean Hean-Chr11:24279831 Hean15g04009 Hean-Chr15:156048274 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g01069 . 8 199 PhytocyaNIN gene family AT4G28365 40.594 5.91e-46 149.0
Hean17g01919 . 19 136 PhytocyaNIN gene family AT1G17800 36.975 2.25e-20 79.0
Hean16g03609 . 14 179 PhytocyaNIN gene family AT1G08500 42.857 8.27e-38 129.0
Hean15g03462 WGDA 3 157 PhytocyaNIN gene family AT2G27035 42.767 7.28e-38 125.0
Hean15g03463 . 11 69 PhytocyaNIN gene family AT4G12880 36.066 3.22e-07 44.3
Hean15g03468 WGDA 9 168 PhytocyaNIN gene family AT5G15350 49.693 4.08e-54 167.0
Hean15g04009 ACH,WGDA 9 191 PhytocyaNIN gene family AT4G28365 45.078 6.21e-42 139.0
Hean14g00745 . 9 201 PhytocyaNIN gene family AT1G08500 54.545 3.52e-69 210.0
Hean13g00262 ACH,WGDA 14 171 PhytocyaNIN gene family AT5G53870 48.503 1.46e-45 154.0
Hean13g02396 . 9 178 PhytocyaNIN gene family AT3G20570 45.161 7.91e-47 151.0
Hean12g00208 . 27 130 PhytocyaNIN gene family AT3G20570 30.476 1.98e-13 62.4
Hean12g00209 . 27 130 PhytocyaNIN gene family AT3G20570 31.429 4.07e-14 64.3
Hean12g00210 . 4 121 PhytocyaNIN gene family AT4G12880 27.778 1.87e-07 45.4
Hean12g00211 . 27 130 PhytocyaNIN gene family AT3G20570 31.429 5.69e-14 63.9
Hean12g00213 . 31 131 PhytocyaNIN gene family AT4G32490 29.6 5.00e-09 51.2
Hean12g00215 . 30 126 PhytocyaNIN gene family AT3G20570 34.0 1.45e-10 54.7
Hean12g00299 ACH 9 126 PhytocyaNIN gene family AT4G28365 35.0 2.32e-17 72.8
Hean12g00388 WGDA 19 138 PhytocyaNIN gene family AT5G57920 51.667 1.00e-41 137.0
Hean12g00506 . 35 136 PhytocyaNIN gene family AT2G25060 37.255 1.11e-16 70.5
Hean12g00509 . 33 137 PhytocyaNIN gene family AT2G25060 39.048 5.60e-18 73.9
Hean12g00517 . 4 126 PhytocyaNIN gene family AT4G28365 34.127 1.23e-16 70.9
Hean12g00766 ACH,WGDA 20 133 PhytocyaNIN gene family AT1G79800 49.123 1.92e-36 124.0
Hean11g00954 ACH,WGDA 8 233 PhytocyaNIN gene family AT4G27520 43.75 1.03e-50 174.0
Hean11g01638 ACH 13 202 PhytocyaNIN gene family AT3G20570 42.857 1.43e-48 155.0
Hean11g01757 . 19 136 PhytocyaNIN gene family AT1G17800 37.815 8.35e-22 82.8
Hean11g01758 WGDA 17 135 PhytocyaNIN gene family AT1G17800 38.333 1.30e-21 82.0
Hean11g01762 . 19 87 PhytocyaNIN gene family AT1G17800 36.232 2.06e-07 43.5
Hean11g01765 . 19 136 PhytocyaNIN gene family AT1G17800 40.336 1.09e-21 82.4
Hean11g01766 . 16 134 PhytocyaNIN gene family AT1G17800 38.71 4.61e-21 80.9
Hean11g01767 . 19 136 PhytocyaNIN gene family AT1G17800 40.336 1.09e-21 82.4
Hean11g01768 WGDA 16 134 PhytocyaNIN gene family AT1G17800 38.71 4.61e-21 80.9
Hean10g03503 WGDA 9 134 PhytocyaNIN gene family AT1G79800 38.095 6.25e-28 105.0
Hean10g03599 WGDA 22 132 PhytocyaNIN gene family AT4G30590 53.153 6.99e-39 130.0
Hean9g03340 WGDA 7 168 PhytocyaNIN gene family AT5G15350 48.765 1.20e-55 171.0
Hean9g03341 WGDA 3 131 PhytocyaNIN gene family AT5G15350 47.287 4.24e-43 140.0
Hean9g03342 WGDA 12 155 PhytocyaNIN gene family AT2G27035 40.69 1.96e-37 124.0
Hean9g03945 . 8 129 PhytocyaNIN gene family AT1G48940 52.459 2.32e-46 148.0
Hean9g04630 ACH 14 151 PhytocyaNIN gene family AT1G79800 40.58 4.41e-37 125.0
Hean6g01894 . 24 136 PhytocyaNIN gene family AT5G15350 31.858 1.32e-14 66.6
Hean6g02825 WGDA 18 136 PhytocyaNIN gene family AT1G17800 39.669 3.63e-22 83.6
Hean5g01174 . 6 126 PhytocyaNIN gene family AT3G18590 33.6 1.59e-13 62.4
Hean5g03365 ACH 7 188 PhytocyaNIN gene family AT3G20570 42.857 4.03e-46 149.0
Hean5g03480 . 83 133 PhytocyaNIN gene family AT1G79800 47.059 4.43e-12 58.2
Hean5g03482 . 7 68 PhytocyaNIN gene family AT1G79800 43.548 1.87e-10 55.5
Hean5g03620 . 16 155 PhytocyaNIN gene family AT2G25060 28.082 2.51e-06 45.1
Hean4g02119 . 13 121 PhytocyaNIN gene family AT4G12880 27.679 2.96e-12 58.2
Hean4g02128 . 11 121 PhytocyaNIN gene family AT4G12880 29.73 4.83e-13 60.5
Hean3g02377 ACH,WGDA 61 267 PhytocyaNIN gene family AT5G53870 41.778 5.42e-31 116.0
Hean3g03433 . 11 160 PhytocyaNIN gene family AT1G64640 55.063 9.02e-49 155.0
Hean2g00261 . 60 164 PhytocyaNIN gene family AT5G15350 40.541 1.59e-23 87.4