AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g00996 ATGGCACACTTGTTGGCTCAGTTTCAGTCGATCAAGATTTCATGTGACGGCCTCGTGATCGCGGTGAAAGATGTGAGCGATTTATGGCCTCTTGTGAAAGAAAAGTTTGAGGAACGGCTTCCGTTTAAACGCGCTATGTTAAACAACAAAAACCATTATCCTGTAACTGTGGACAACCTGCAAGCTGAGTTTTTGTTAACTACCGATTCGAGGATCAAAAGTCGGGTCCCTCAGGATCAACTGTTCTTTTGTTTTCAAGAACCTTATGCAACTGTGGTTCTTGTAGCATGTGAGGATCTAGACGAGTTCAAGACAGTATTAAAACCGCGTCTGAAGTTAATCTTGCAAAATGAAGAGGAGTGGTTCATCGTGTTTGTGTCCAAAGCTAAATCGGAAAAGGACTCAACGAGCAAGATGGAAAAAAAGGTTTACGCAAGACTTGAAGTTGATTTCAATTCAAGGAGGAGAGAAAGGTGTTGCAAGTACGACTTGCATGGAACCGTAGTAACCTTTTGGGATGACTTTGAACTCAAAATCATGGAGTGCATCAGAAACACATTTGATAGGCGCGTCCAGTTTTACGAGGACGAGATTCGTAAGCTCAACGAACAACGTCTTACGCCCGTTTGGACCTTCTGTAACTTTTTCATCCTCAAAGAAAGCCTGGCATTCATGTTAGAGATGGCTAATCTTCATGAGGATTCGTTGCGCGAATATGATGACCTAGAGTTGTGTTACATGGATACAGTTAAAAATGAAGACAAAAAGAGGGAATTTGGAGGAACGGAACATGGAGATGATCAATCTGCCATACTAAGCCGTAACAACAAGCAACTCACACAGATCGTTCTCGAAACTTCCTTTAGGGAGTTTGAATTCCAACAGTACCTATTTGCATGTCAAGCTAAGCTGTTGTTTGATCTAAACCGTCCATTTGACGTTGCATCAAGAGGGTTCTCATTCATAGCCAGTTTCTCAGAAGCATTGGGCCGGCAAGAGAGTAATTTGCCTTTCTGTACGAGAGAAGTTTGGATCCTGACCTCATGTTTGAGCTTGATCAATGCAACTGCTGACCATTACAGAGATGGGCAAATAGCACCGGATTTAGAACGAGAATATTATCGTATACGGGCTGAGTTATACTCTCAATCCCGAGTAAAGTTAATGAGACTTGCATATCTTATCGGGTTCGGATCTACTATAGAAAGAAGTCCACTCAACAGTGCTTCACTTAGCATGTTACCTTGGCCTAAGCCAGCAGTTTGGCCTTCAGTTCCCTCTGATGCTTCATCTGAGGTTCTTGACAAAGAAAAGACAATTCTTCAAGTTACTCCAAGAATCAAGCACTTTGGTATTCAGAGCAAACCATTGTCTCTTGAACCCTCTTCTCTTCTGTCTGATGCAAGCTCGGTTGATACCACGAGACTTTCAGAACTTTTTGTGGCTGCTGAACACGCTCTTCGTGCGACTATTTCTGATCCTGATTTACGGAAATCTTTATCGTCTTTAGAGGAATTTGAGAAAAAATATCTGGACCTATCAAAGGGTGCTGCTGATAACTATTATCATGCATGGTGGAAAAGGCATGGAGTCGTTTTCGACGGCGAAATTGCGTCTGTTTATTTCAAACATAAGAATTACGAACAGGCTGCGAGTTCATACGAAAAGGTTTGCGCTCTTTATTCTGGTGACGGATGGCAAGATTTGTTAGCGGATGTGCTTCCGAATCTAGCCGAGTGCCAGAAAATACTTAACGATAAGCCTGGTTACTTATCGTCTTGTGTGAGATTACTTTCGTTAGATAAAAACTTGTTCGCGGTCAAAGAACGCCAAGCGTTTCAGTCAGAACTAGTTCATCTTGCACATAGTGATATGGCTGATCCGGTCCCTTTAGACGTGTCGTCACTGATAACATATTCTGGTAATTCGGGTCCACCCGTGGAGCTTTGTGATGGGGATCCGGGTACCTTGACTGTAACTTTATGGAGTGAGTTTCCTGATGATATTTCTCTTGAATCGCTTAGTCTTACGTTGACCGCTACAAATAATGCTGATGAGCGTGTTAAGACGATCAAGAGCAGTGGTGTTACTATGTTGAAAACGGGTTGGAATACGATTGATCTATCGTTGCCCCCACAGAAACCGGGCTCTTACGAGTTGGGAGTTCTTACGGGGCAGATTGGTCATTTAAGATTCAGGTCTCATGGTTTTTCCAGAGGTGGGCCAGCAAATAGACATGCTGATGATATGAGTTTTGATAAGCCTGCTAAACCTGTCTTGAAGGTGTTCAAACCAAGGTCCCTTGTGGATCTATACGCAGCAGTTTCATCCGCATTATTAATGAACAAGCCTCAGTGGGTCGGGATCGTTATCAAGCCATTAAACTACTCCCTCAAGGGTGCTCGTCTACACATTGACGTCGGGCCTGGGTTAAAGATCGAGGAGTCACGTGCCATTGAAATCGAGAAATATGCCGATAACGATAATAACAGTTCTAATTCTTCTAATATTCCCACAGAAATTTCTCAAATTAATCTTACAAATGGTAGTATAGAGTTACCAGATTGGGCCAGCAATATAACTAGCATTTTTTGGACTCCTGTCTGTGCCATTAGTGATGGGCTGCCAAGAGGAACATCTGCAGGCGTAATATCGACTCAAAGGCCAAGCATTGCGAATGGGATGAGGACTTTAGCCCTGAAACTTGAATTCGGGGTGTCACATAATCAGATAATGAAAAGGACTATACCTATTCATTTCACCGACCCATTCCACGTCAGCACACGGGTCACAGACCAGGGCAGTGACGGTTCTTTGTTTTTGCAGGTGATATTACAGTCACAGGTGAAGGCCTCATTAACCATACATGATGTTTGGTTAGATTTACAAGATGGGTTTTCTCACGCTGGACGAGGTGATGGGAGACCAACATCTGGCATGTTCCCATTGATTGTTCCTCCAGCTTCTAATTCTGGAGTTTTGTTTGGTATATCACTTGGAGCTACAACCGCCGAAGATGAAGGGAAAGCGGAGCATCGTGATACAATAATAAATATAAAATATGAAATATGTGGGGATAGAAATCATGGATCCCACACCCCTATCTCTCTAAAACCCGAAGGACCCGAAAATGCCGACGTCACACCATTTTTAACATTCAGAAGTGGTCTCGTTTTACAACGGCCCGTGCAAGAACCTTTATTAGCAGTTGCATTTCTTCCTTTACCCTCAAACGGTCTCACAGTTGGTCAGCTTGTCACATTTAGATGGAGACTCGAAAGGTTGACCAGCTTTGACCTCAAGGACGAATTATTGTACGAAGTCAACGCGAATTCAAGGAATTGGATGTTTGCCGGAAGGAAACGAGGCCATGCCCCTCTCTCCTCAAAACAAGGTGCAAGAATTGAGATATCAATAATGTGTGTGCCACTAGCTGCTGGACATGTGCGCCCTCCACAACTCCACTTGCCAAATGTCAATAAGGCCCATATATGCTGCAATCCAGCAGGCCCACATTTAGTGTGTGTCCTGCCTCCACCTTTGAGCTCATCATTTTGCATTCCAGCATGA 3570 43.47 MAHLLAQFQSIKISCDGLVIAVKDVSDLWPLVKEKFEERLPFKRAMLNNKNHYPVTVDNLQAEFLLTTDSRIKSRVPQDQLFFCFQEPYATVVLVACEDLDEFKTVLKPRLKLILQNEEEWFIVFVSKAKSEKDSTSKMEKKVYARLEVDFNSRRRERCCKYDLHGTVVTFWDDFELKIMECIRNTFDRRVQFYEDEIRKLNEQRLTPVWTFCNFFILKESLAFMLEMANLHEDSLREYDDLELCYMDTVKNEDKKREFGGTEHGDDQSAILSRNNKQLTQIVLETSFREFEFQQYLFACQAKLLFDLNRPFDVASRGFSFIASFSEALGRQESNLPFCTREVWILTSCLSLINATADHYRDGQIAPDLEREYYRIRAELYSQSRVKLMRLAYLIGFGSTIERSPLNSASLSMLPWPKPAVWPSVPSDASSEVLDKEKTILQVTPRIKHFGIQSKPLSLEPSSLLSDASSVDTTRLSELFVAAEHALRATISDPDLRKSLSSLEEFEKKYLDLSKGAADNYYHAWWKRHGVVFDGEIASVYFKHKNYEQAASSYEKVCALYSGDGWQDLLADVLPNLAECQKILNDKPGYLSSCVRLLSLDKNLFAVKERQAFQSELVHLAHSDMADPVPLDVSSLITYSGNSGPPVELCDGDPGTLTVTLWSEFPDDISLESLSLTLTATNNADERVKTIKSSGVTMLKTGWNTIDLSLPPQKPGSYELGVLTGQIGHLRFRSHGFSRGGPANRHADDMSFDKPAKPVLKVFKPRSLVDLYAAVSSALLMNKPQWVGIVIKPLNYSLKGARLHIDVGPGLKIEESRAIEIEKYADNDNNSSNSSNIPTEISQINLTNGSIELPDWASNITSIFWTPVCAISDGLPRGTSAGVISTQRPSIANGMRTLALKLEFGVSHNQIMKRTIPIHFTDPFHVSTRVTDQGSDGSLFLQVILQSQVKASLTIHDVWLDLQDGFSHAGRGDGRPTSGMFPLIVPPASNSGVLFGISLGATTAEDEGKAEHRDTIINIKYEICGDRNHGSHTPISLKPEGPENADVTPFLTFRSGLVLQRPVQEPLLAVAFLPLPSNGLTVGQLVTFRWRLERLTSFDLKDELLYEVNANSRNWMFAGRKRGHAPLSSKQGARIEISIMCVPLAAGHVRPPQLHLPNVNKAHICCNPAGPHLVCVLPPPLSSSFCIPA 1189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g00996 1189 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1088 1159 IPR022233 -
Hean11g00996 1189 SUPERFAMILY TPR-like 537 614 IPR011990 GO:0005515(InterPro)
Hean11g00996 1189 Coils Coil 184 204 - -
Hean11g00996 1189 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1-TMEM1 9 1188 IPR045126 GO:0006891(PANTHER)|GO:0034498(PANTHER)|GO:0048193(InterPro)|GO:1990071(PANTHER)|GO:1990071(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g00996 K20307 trafficking protein particle complex subunit 10
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Event-related genes

Select Gene_1 Gene_2 Event_name
101092 Hean11g00996 Hean3g02456
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:25474956 Hean3g02456 Hean-Chr3:130883446 dispersed