AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01017 ATGTCTGTATCTAATCACCATCGTTCAAATTCCGACGGAAAGCAACGGCGGTTATTTCCGTTTTGGCAATCGTCGACAAATAATCTTCAATTTCAGAGTAACAATAGCAACGGAAACGGTGTCGTATCGACTGGCCGTTCTTCAAATAAGTTGTCATCGGTGGCGAAATCTCTTCTGCCAGCTAGGCGACGGCTCCGGCTTGATCCGGCTAACAATCTCTACTTTCCGTATGAGCCTGGTAAACAGGTGAGAAGCGCTGTTCGGATCAAGAATCATAGCAGTTCTCATGTTGCTTTTAAGTTTCAAACCACCGCACCTAAGAGCTGTTATATGCGACCTCCTGGTGGCGTTCTGGCTCCTGGGGAAAGCCTCATTGCTACAGTTTTTAAGTTTGTTGAGCAACCGGACAAGAACGAAAAACAATTGGACCAAAGGAGCAAGGTGAAGTTCAAGATCATGAGCCTCAAGGTGAAAGAAGGAACAGACTTTGTGCCTGAATTGTTTGATGAACAAAAGGATGAAGTAGTTGTTGAGCGGATTTTGCGTGTTATTTTCATAAATGCGGATCGCCCTACCCCAGCATTGGAAAAACTGAAACATCAGCTGGCTGAAGCCGAAGCTGAATTAGAATTACGGTTACGGAGAAAACCTCAAGTGGATACTGGTCCAAAAGTTGTGGGCCAAGGGCTTGTTATTGACGAGTGGAAAGAACGAAGGGAGAAATACCTTGCTCGACAACAGGTGGAGGCTGTAGATTTGATGTGA 765 45.36 MSVSNHHRSNSDGKQRRLFPFWQSSTNNLQFQSNNSNGNGVVSTGRSSNKLSSVAKSLLPARRRLRLDPANNLYFPYEPGKQVRSAVRIKNHSSSHVAFKFQTTAPKSCYMRPPGGVLAPGESLIATVFKFVEQPDKNEKQLDQRSKVKFKIMSLKVKEGTDFVPELFDEQKDEVVVERILRVIFINADRPTPALEKLKHQLAEAEAELELRLRRKPQVDTGPKVVGQGLVIDEWKERREKYLARQQVEAVDLM 254
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01017 254 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 64 243 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Hean11g01017 254 Gene3D Immunoglobulins 60 188 IPR013783 -
Hean11g01017 254 Coils Coil 195 215 - -
Hean11g01017 254 ProSiteProfiles Major sperm protein (MSP) domain profile. 64 186 IPR000535 -
Hean11g01017 254 Pfam MSP (Major sperm protein) domain 65 172 IPR000535 -
Hean11g01017 254 SUPERFAMILY PapD-like 54 196 IPR008962 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01017 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:26154390 Hean5g00197 Hean-Chr5:4933432 dispersed
Hean Hean-Chr11:26154390 Hean5g00193 Hean-Chr5:4872913 transposed
Hean Hean-Chr11:26154390 Hean16g02759 Hean-Chr16:140766874 transposed