AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01131 ATGGCAAAACACACACTAATTCTCACTCTCATATTCACATTCATATGTAGCACTATTCTCCCCATATCTCAACAAGAACTTGTGACAGAATCCTCTATCCATGATCTCCTCAAAAGCAAAGGGTTACCGGTGGGTTTGTTCCCTAAAGAAGTGGAGTCGTTTACTTTGTACGACACAGGGTTGCTAGAAGTGTTCCTACGAGGACCCTGCTTGACGAAATTCGATACGATGGCGTTTTATGAGAGCACGATTAGAGCAAACCTTACGTACGGTAGTCTTACTGGCGTTGAAGGGTTGTCTCAGGAAGAGTTGTTTCTTTGGTTGCCTGTTAAAGATATTATTGTTGATGATCCGAAATCTGGGTTAATCTTGTTCGATATTGGACTTGCGCATAAGCAGTTGTCGCTTTCGTTGTTTGAAGATCCTCCTGATTGCAAATCTGAAGGTATGTTGAATTTGAAGAAGAGATCAAGAAAGGAGATGGGATTTGATGCTCAAATGTAG 504 41.47 MAKHTLILTLIFTFICSTILPISQQELVTESSIHDLLKSKGLPVGLFPKEVESFTLYDTGLLEVFLRGPCLTKFDTMAFYESTIRANLTYGSLTGVEGLSQEELFLWLPVKDIIVDDPKSGLILFDIGLAHKQLSLSLFEDPPDCKSEGMLNLKKRSRKEMGFDAQM 167
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01131 167 PANTHER T31J12.3 PROTEIN-RELATED 26 146 IPR007493 -
Hean11g01131 167 Gene3D - 20 148 IPR036758 -
Hean11g01131 167 Pfam Protein of unknown function, DUF538 33 140 IPR007493 -
Hean11g01131 167 FunFam Uncharacterized protein At3g07460 20 149 - -
Hean11g01131 167 SUPERFAMILY At5g01610-like 6 147 IPR036758 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01131 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3206426 Hean Hean11g01131 Hean-Chr11:30174588 Hean11g03523 Hean-Chr11:162718691
3261556 Hean Hean11g01131 Hean-Chr11:30174588 Hean16g01464 Hean-Chr16:58559667