AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01246 ATGGATGTGGTCGCTATTGACCCCTCAATTTCATCGTACCAAACAACCCCTAAACTTAAACTCCCCCTTTTCAGATTACCATCAAGAACACCCCCACGACTCTTACATTGTACCCCTCTTCGATTCAGCCACAAGATTGTTCTAACAAACTTTCACGATTCAAGATTCAACAGTGTTGTTCAAAAAGACAGAGGCTTGAGATCTGTTTGGGTCAAAAGCAGCAGCAGTCTTGAAAACCCCTCAACTTTGGATTCTAATTTTGTTGAAATCTTGGTTAAAAAAGGTTTGATTTTGGGGGCTGTTTGTTGTGTGTTGGGATGCAGGGGGGTTTTGGCTGCAGAAGGGGTTTTAAATGGTGGGAATTTTGTGGGTTTGGAGCAGCAGGTTAAAGGGTCTATGGTCAATTATATGCCAAAAGTTTTGATGGTTCTTAAGGTTTTGAAGGAACAGGGGTTGATTTTGGCTGCACTTTTTGGTTTGTCTGCTTTTTTTTCTATGGCTGAGACTTCAATTACAACTCTTTGGCCTTGGAAGGTTAGAGAGCTGGCTGAGAAAGAGTCTGAGAATGGTGTGTTCAAAATGCTGCGGAATGATGTTACGCGGTTCTTGACTACGATACTTATTGGCACAACTGTTGTAAATATTGGAGCAACAGCACTAGTGACTGAAGCAGCAACTGCGATATTTGGTGAAGCAGGTGTGAGTGCTGCCACAGGAGTAATGACGGTTGCAGTCTTGTTACTCACTGAAATAACTCCAAAAAGTATAGCCGTTCATAATGCCACCGAGGTTGCAAGAGTTGTGGTCAGGCCGATTGCATGGCTTTCTTTAGTCTTATATCCTGTTGGAAGAGTTGTAACTTATCTCTCTATGGGAATGCTCAAGTTGCTCGGTCTCAAAGGAAGAAGTGAACCGTATGTCACTGAAGACGAACTGAAGTTGATGTTACGAGGAGCTGAATTAAGTGGGGCCATAGAAGAGGAAGAACAGGATATGATTGAAAATGTTTTAGAAATTAAAGACACATATGTTCGTGAAGTTATGACACCTTTGGTTGATGTTGTAGCTAGTGATTCTAGTGCAACGTTAATCGATTTCCACACCTTGTGGGTAACTCATCAGTATTCAAGGGTACCTGTTTTTGAACAACGTGTAGATAATATTGTCGGCATTGCATATGCAATGGATCTATTAGACTATGTTCAAAAGGGGGACCTTCTAGAAAGTACGACGGTGGGGGATATGGCTCATAAACCTGCTTATTTTGTGCCTGATTCAATGTCGGTTTGGAATCTTCTTAGAGAATTTCGCATTAGGAAGGTACACATGGCTGTTGTCTTGAACGAATACGGTGGGACTGTTGGAATTGTAACACTGGAAGATGTAGTTGAAGAAATCGTTGGTGAAATTTTTGACGAAAATGATTCAAAAGAGGAAATAGATAAAAAGACTGGTTATATAGTAATGAGGGCGGAAGGAATTTATGATGTGGATGCAAATACTTCAATCGACCAGCTTTCCGAAGACCTCAACATAAAGATGCCAGAGGGTCATCAATACGAAACGGTGTCGGGGTTTGTGTGTGAAGCGTTTGGATACATCCCAAAAACAGGTGAAAGCATAAAAGTGGTACTTGAGAAGGAAGAAGTTGATGACGAGTATATCGAGGATGATGGCGATCGCCAACATCAAAAAGAAAAAGAAAAGAGCCAAGTATTTCAAATAGAGATTTTAGCAGGCAATGCTAGAAAAGTTGGTGCGGTGAGGTTTGAACGGGTAACCAATGAGGAGGAAACGGAGGAGAAGAAGGTGGTGGTTCCGGTCATCACGAAAAGGAAATGGGGCGGTGATGACGATGATGAAACGAATATAATTGATGAGGGTGAAGATGATGTAATTCCACAACATGAAATAAAAGAGGGAGAATGA 1929 41.52 MDVVAIDPSISSYQTTPKLKLPLFRLPSRTPPRLLHCTPLRFSHKIVLTNFHDSRFNSVVQKDRGLRSVWVKSSSSLENPSTLDSNFVEILVKKGLILGAVCCVLGCRGVLAAEGVLNGGNFVGLEQQVKGSMVNYMPKVLMVLKVLKEQGLILAALFGLSAFFSMAETSITTLWPWKVRELAEKESENGVFKMLRNDVTRFLTTILIGTTVVNIGATALVTEAATAIFGEAGVSAATGVMTVAVLLLTEITPKSIAVHNATEVARVVVRPIAWLSLVLYPVGRVVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTYVREVMTPLVDVVASDSSATLIDFHTLWVTHQYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGDLLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIDKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPKTGESIKVVLEKEEVDDEYIEDDGDRQHQKEKEKSQVFQIEILAGNARKVGAVRFERVTNEEETEEKKVVVPVITKRKWGGDDDDETNIIDEGEDDVIPQHEIKEGE 642
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01246 642 CDD CBS-pair-CorC-HlyC-assoc 344 464 IPR044751 -
Hean11g01246 642 Gene3D - 323 478 IPR046342 -
Hean11g01246 642 Pfam Transporter associated domain 490 592 IPR005170 -
Hean11g01246 642 ProSiteProfiles CNNM transmembrane domain profile. 143 329 IPR002550 -
Hean11g01246 642 ProSiteProfiles CBS domain profile. 348 409 IPR000644 -
Hean11g01246 642 ProSiteProfiles CBS domain profile. 415 473 IPR000644 -
Hean11g01246 642 SUPERFAMILY FAD-binding-transporter-associated domain-like 486 601 IPR036318 GO:0050660(InterPro)
Hean11g01246 642 PANTHER HEMOLYSIN-RELATED 120 603 - -
Hean11g01246 642 MobiDBLite consensus disorder prediction 613 642 - -
Hean11g01246 642 FunFam Magnesium-cobalt efflux protein CorC 325 475 - -
Hean11g01246 642 SMART CorC-HlyC-2 488 594 IPR005170 -
Hean11g01246 642 Pfam CBS domain 412 467 IPR000644 -
Hean11g01246 642 Pfam CBS domain 344 402 IPR000644 -
Hean11g01246 642 Gene3D - 485 578 IPR016169 -
Hean11g01246 642 Pfam Cyclin M transmembrane N-terminal domain 152 329 IPR002550 -
Hean11g01246 642 SUPERFAMILY CBS-domain pair 331 470 IPR046342 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01246 K03699 magnesium and cobalt exporter, CNNM family
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:35108609 Hean4g04359 Hean-Chr4:204308966 dispersed