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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01279 ATGGATCCCAACACCACCACTTCATCCTTGGCCAATGCCATCAACCTCAACACTGCTCACCGTCAAGTGATTCCCCTCACACTCTTCGTCGCCGTACTTTGTCTCTGTTTAGTTATCGGACACCTGCTTAACGAGAATCGTTGGGTCAATGAGTCCATCACCGCCATCATCATCGGTTGTGTTGTTGGGACGATCATCTTATGTACGAGCAAATGGAAAAGCTCTCAGTTGCTGAGATTTGATGAAGAACTCTTTTTTATATATTTGCTTCCACCTATAATCTTTAATGCAGGATTTTCGGTGAAGAAGAAACAGTTTTTTCATAATTTTTTCCCGATTATGTTGTTTGGAGTTATTGGTGTATTCATATCCACATCCATCGTTGCTGCGGGTTGCTGGTGGCTGTTCCCAAAATTGGGGTTCAAGGGTTTGACTATCAGCGAGTATCTTAGTATAGGGACCATTTTCTCATCTACAGATACTGTATGTACATTACAGGTTTTGCATCAAGATGAGACTCCTTTGCTCTACAGTCTAGTTTTTGGTGAAGGGGTTGTAAATGATGCAACATCAGTTGTTCTCTTCAATGCGGTTCGAAAGATCACTGCAAATACGCTTGGTGTCAAGGCTGCTCTTCGAATCGTATTAGATTTCTTGTATTTATTCTCTACTAGCACTCTTCTCGGAGTTACCGCCGGGCTTTTGGCATCGTATATTCTCCGAGGTTTGGGCTTTGGCAGGCATTCAAGCGTACGCGAAATTTCTTTGATGATTTTGATAGCATATTTGTCCTACATGTTAGCGGAGTTATTTGAACTCAGTGGAATATTAACAGTCTTTTTTTCTGGAGTTCTAATGTCGCACTATGCATGGCATAATGTAACCGAGAGCTCGAGAGTTACAACCAAGCATGCTTTTGCAGCGATGTCTTTTATCGCAGAAACGTTCATATTTCTTTATGTGGGAATGGACGCACTGGACTATGAGAAGTGGAAAATGAGCATATTAAGTTTTTGGACTTCAATAGGCATATACAGCACTGTGATGTTTTTGATACTGCTCGGACGAGCTGCTTTTGTGTTTCCTCTTTCTTTAATTGCTAATTACTTGCATAGAAGTGACGATCCTTCATCAAAAATCACAGGACAGCACCAGGTAGTAATTTGGTGGGCTGGTCTGATGAGAGGTGCTGTCTCTGTAGCTTTGGCATTTAAACAGTTTACTCTTTCTGGTGTGACACTCGATCCAATTAACGCCACAATGATCACCACGACTACTGTCATCGTGTTATTCAGTACAGTTGTTTTTGGTTTTTTGACAAAACCGCTTATTAGATATCTTCTTCCTACTAATACAAGAAACGCCAGTCTACCTAGATCTACGTCTCCCAAAGAGGATATTACACTTCCGTTACTTTCTTTTGAAGAATCAGCTTCTGAAAATTTCTCTAGAGCAAAAGAGAACATGTCAATGCTAATGGAAAGACCTGTTTACACTATCCACTCCTATTGGAGGAGATTCGATGACACTTATATGCGACCTATATTCGGTGGGGCCCGTAACAGTAACCTTTCGTAG 1578 41.25 MDPNTTTSSLANAINLNTAHRQVIPLTLFVAVLCLCLVIGHLLNENRWVNESITAIIIGCVVGTIILCTSKWKSSQLLRFDEELFFIYLLPPIIFNAGFSVKKKQFFHNFFPIMLFGVIGVFISTSIVAAGCWWLFPKLGFKGLTISEYLSIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVRKITANTLGVKAALRIVLDFLYLFSTSTLLGVTAGLLASYILRGLGFGRHSSVREISLMILIAYLSYMLAELFELSGILTVFFSGVLMSHYAWHNVTESSRVTTKHAFAAMSFIAETFIFLYVGMDALDYEKWKMSILSFWTSIGIYSTVMFLILLGRAAFVFPLSLIANYLHRSDDPSSKITGQHQVVIWWAGLMRGAVSVALAFKQFTLSGVTLDPINATMITTTTVIVLFSTVVFGFLTKPLIRYLLPTNTRNASLPRSTSPKEDITLPLLSFEESASENFSRAKENMSMLMERPVYTIHSYWRRFDDTYMRPIFGGARNSNLS 525
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01279 525 PANTHER SODIUM-HYDROGEN EXCHANGER 26 520 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Hean11g01279 525 Gene3D - 145 197 - -
Hean11g01279 525 PRINTS Na+-H+ exchanger signature 98 112 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hean11g01279 525 PRINTS Na+-H+ exchanger signature 113 121 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hean11g01279 525 PRINTS Na+-H+ exchanger signature 84 95 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hean11g01279 525 PRINTS Na+-H+ exchanger signature 153 163 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hean11g01279 525 Pfam Sodium-hydrogen exchanger family 32 444 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Hean11g01279 525 NCBIfam sodium-hydrogen exchanger 3 25 482 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01279 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
101105 Hean11g01279 Hean3g02588
402174 Hean11g01279 Hean6g02863
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:36143168 Hean3g02588 Hean-Chr3:136831952 dispersed
Hean Hean-Chr11:36143168 Hean13g02719 Hean-Chr13:121942662 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g00284 ACH,WGDA 30 283 Antiporters gene family AT1G79900 32.886 1.89e-40 141.0
Hean17g00623 . 77 368 Antiporters gene family AT3G08580 39.394 3.98e-62 200.0
Hean17g00677 WGDA 7 543 Antiporters gene family AT3G05030 72.913 0.0 808.0
Hean17g01992 . 8 821 Antiporters gene family AT2G13620 69.485 0.0 1137.0
Hean17g02136 . 155 268 Antiporters gene family AT5G64290 63.158 4.23e-47 157.0
Hean17g02137 . 138 272 Antiporters gene family AT5G64290 63.971 2.52e-52 173.0
Hean17g02239 . 97 194 Antiporters gene family AT5G64290 57.143 1.42e-32 118.0
Hean17g02240 . 388 523 Antiporters gene family AT5G64290 50.735 2.60e-36 127.0
Hean17g03395 . 1 385 Antiporters gene family AT5G13490 76.486 0.0 587.0
Hean17g03912 . 202 284 Antiporters gene family AT3G62270 77.108 1.60e-39 136.0
Hean17g04498 . 37 844 Antiporters gene family AT5G37060 43.436 0.0 686.0
Hean17g04525 . 168 235 Antiporters gene family AT5G46110 79.412 7.82e-32 112.0
Hean17g04526 . 239 301 Antiporters gene family AT5G46110 87.302 1.08e-32 114.0
Hean17g04527 . 306 405 Antiporters gene family AT5G46110 83.0 1.02e-56 178.0
Hean16g01303 WGDA 52 576 Antiporters gene family AT3G19490 80.451 0.0 812.0
Hean16g01796 . 162 367 Antiporters gene family AT5G13490 63.107 1.24e-69 214.0
Hean16g02540 . 27 236 Antiporters gene family AT5G55470 31.507 3.27e-20 87.4
Hean16g02541 . 265 479 Antiporters gene family AT3G05030 33.641 7.95e-22 92.4
Hean16g03085 . 1 384 Antiporters gene family AT5G13490 77.461 0.0 591.0
Hean16g03086 . 1 287 Antiporters gene family AT5G13490 56.229 1.47e-96 289.0
Hean15g00097 . 14 785 Antiporters gene family AT1G06970 34.013 2.87e-161 489.0
Hean15g00590 . 99 274 Antiporters gene family AT5G64290 59.091 1.01e-66 214.0
Hean15g00631 . 271 306 Antiporters gene family AT5G64290 55.556 4.56e-08 45.8
Hean15g00632 . 344 563 Antiporters gene family AT5G64290 36.444 1.33e-30 115.0
Hean15g00633 . 271 306 Antiporters gene family AT5G64290 52.778 9.42e-08 45.1
Hean15g00634 . 344 563 Antiporters gene family AT5G64290 37.333 3.16e-31 116.0
Hean15g00636 . 33 1143 Antiporters gene family AT2G01980 64.311 0.0 1384.0
Hean15g00639 . 33 1143 Antiporters gene family AT2G01980 64.223 0.0 1384.0
Hean15g00663 . 94 563 Antiporters gene family AT5G64290 70.213 0.0 693.0
Hean15g00665 . 271 342 Antiporters gene family AT5G64290 52.778 1.87e-21 85.5
Hean15g00668 . 424 512 Antiporters gene family AT5G64290 46.067 1.02e-19 81.3
Hean15g00877 . 17 388 Antiporters gene family AT1G61800 73.879 0.0 546.0
Hean15g01829 . 93 273 Antiporters gene family AT5G64290 66.298 2.48e-82 254.0
Hean15g01830 . 271 563 Antiporters gene family AT5G64290 64.164 1.80e-135 394.0
Hean15g01908 . 265 284 Antiporters gene family AT3G62270 75.0 7.83e-07 41.2
Hean14g01619 . 113 229 Antiporters gene family AT1G79900 32.558 2.19e-14 67.4
Hean14g01705 . 256 329 Antiporters gene family AT3G05030 83.784 4.59e-39 133.0
Hean14g01968 WGDA 691 776 Antiporters gene family AT1G16380 60.92 9.36e-34 120.0
Hean14g01969 . 54 693 Antiporters gene family AT1G79400 34.663 5.88e-127 393.0
Hean14g02430 . 16 545 Antiporters gene family AT1G08960 61.985 0.0 593.0
Hean14g03036 . 116 204 Antiporters gene family AT5G46110 89.888 2.71e-51 164.0
Hean14g03163 ACH,WGDA 1 383 Antiporters gene family AT5G13490 77.023 0.0 568.0
Hean14g03188 ACH 273 367 Antiporters gene family AT5G13490 83.158 1.86e-50 161.0
Hean14g03189 . 273 367 Antiporters gene family AT5G13490 83.158 1.86e-50 161.0
Hean14g03239 ACH 67 570 Antiporters gene family AT5G17860 47.047 5.14e-161 468.0
Hean13g01508 ACH 45 566 Antiporters gene family AT5G17860 46.097 4.13e-162 471.0
Hean13g01695 . 905 1021 Antiporters gene family AT2G01980 44.915 6.37e-20 82.0
Hean13g02217 . 21 566 Antiporters gene family AT5G51710 75.812 0.0 843.0
Hean13g02683 . 128 228 Antiporters gene family AT2G47160 76.238 2.01e-45 155.0
Hean13g02719 WGDA 13 542 Antiporters gene family AT3G05030 75.472 0.0 820.0
Hean13g02862 WGDA 76 407 Antiporters gene family AT5G17630 81.325 0.0 545.0
Hean13g02982 . 70 171 Antiporters gene family AT1G74810 78.431 3.99e-52 172.0
Hean13g03020 . 905 1021 Antiporters gene family AT2G01980 44.068 1.32e-18 78.6
Hean13g03156 ACH,WGDA 30 277 Antiporters gene family AT1G79900 34.317 7.81e-44 149.0
Hean12g00021 . 43 559 Antiporters gene family AT5G17860 41.774 4.47e-140 417.0
Hean12g01178 . 166 216 Antiporters gene family AT1G08960 80.392 8.31e-18 75.1
Hean12g03015 . 33 971 Antiporters gene family AT2G01980 62.156 0.0 1116.0
Hean11g01279 ACH,WGDA 12 525 Antiporters gene family AT5G55470 69.844 0.0 747.0
Hean11g02270 ACH 60 445 Antiporters gene family AT5G01490 57.474 9.99e-156 446.0
Hean11g02936 . 24 801 Antiporters gene family AT3G52080 44.159 0.0 691.0
Hean11g03049 . 1 410 Antiporters gene family AT5G46110 76.794 0.0 621.0
Hean11g03051 . 1 409 Antiporters gene family AT5G46110 77.427 0.0 633.0
Hean11g03052 . 1 410 Antiporters gene family AT5G46110 78.45 0.0 638.0
Hean11g03576 ACH 42 380 Antiporters gene family AT5G13490 77.035 0.0 511.0
Hean11g03580 WGDA 1 557 Antiporters gene family AT5G12860 80.817 0.0 872.0
Hean11g04447 . 180 240 Antiporters gene family AT5G54800 95.082 1.78e-34 119.0
Hean10g00591 ACH 7 534 Antiporters gene family AT3G05030 63.516 0.0 670.0
Hean10g00739 . 1 697 Antiporters gene family AT2G47160 81.047 0.0 1150.0
Hean10g02161 ACH 92 563 Antiporters gene family AT5G64290 76.907 0.0 754.0
Hean10g02820 ACH 11 440 Antiporters gene family AT1G55730 66.744 0.0 572.0
Hean10g02822 . 322 436 Antiporters gene family AT1G55730 38.462 9.05e-13 62.0
Hean10g03627 . 180 240 Antiporters gene family AT5G54800 95.082 1.78e-34 119.0
Hean9g00056 WGDA 44 590 Antiporters gene family AT2G19600 80.832 0.0 858.0
Hean9g01278 WGDA 32 563 Antiporters gene family AT5G64290 77.068 0.0 819.0
Hean9g02296 . 269 354 Antiporters gene family AT5G13490 83.721 5.11e-49 158.0
Hean9g03971 . 6 302 Antiporters gene family AT5G17400 73.064 1.43e-161 450.0
Hean9g04188 ACH 1 682 Antiporters gene family AT3G62270 75.758 0.0 1064.0
Hean9g04553 . 522 572 Antiporters gene family AT4G32510 56.863 5.04e-15 67.0
Hean9g04554 ACH 6 672 Antiporters gene family AT1G15460 71.365 0.0 995.0
Hean9g04555 . 6 672 Antiporters gene family AT1G15460 70.796 0.0 990.0
Hean9g04609 ACH 1 296 Antiporters gene family AT1G79900 67.974 1.92e-144 407.0
Hean8g02943 ACH,WGDA 47 388 Antiporters gene family AT1G61800 78.261 0.0 544.0
Hean8g03215 ACH,WGDA 4 404 Antiporters gene family AT5G33320 63.549 2.54e-177 498.0
Hean8g03216 ACH,WGDA 1 687 Antiporters gene family AT3G62270 76.259 0.0 1092.0
Hean7g00562 . 51 586 Antiporters gene family AT2G19600 80.996 0.0 847.0
Hean7g00694 . 4 656 Antiporters gene family AT5G25430 65.596 0.0 904.0
Hean7g01323 WGDA 1 776 Antiporters gene family AT1G16380 40.051 0.0 553.0
Hean7g02089 . 1 837 Antiporters gene family AT3G53720 65.077 0.0 1031.0
Hean7g02206 WGDA 1 383 Antiporters gene family AT5G13490 77.023 0.0 568.0
Hean7g02405 . 55 381 Antiporters gene family AT3G01550 70.122 2.16e-162 459.0
Hean7g02408 . 47 377 Antiporters gene family AT3G01550 67.169 1.26e-155 442.0
Hean6g00293 ACH 1 795 Antiporters gene family AT4G23700 64.447 0.0 1025.0
Hean6g00435 ACH,WGDA 30 283 Antiporters gene family AT1G79900 36.14 3.01e-45 153.0
Hean6g01264 WGDA 13 543 Antiporters gene family AT3G05030 73.446 0.0 819.0
Hean6g02042 ACH,WGDA 41 436 Antiporters gene family AT2G38170 62.374 5.01e-167 474.0
Hean6g02463 . 6 452 Antiporters gene family AT3G51860 70.133 0.0 580.0
Hean6g02465 . 6 451 Antiporters gene family AT3G51860 70.47 0.0 581.0
Hean5g00579 ACH,WGDA 45 440 Antiporters gene family AT2G38170 63.889 1.03e-169 482.0
Hean5g01080 . 228 328 Antiporters gene family AT3G62270 75.248 1.34e-48 163.0
Hean5g01502 . 1 810 Antiporters gene family AT5G41610 65.228 0.0 1026.0
Hean5g02344 . 905 1021 Antiporters gene family AT2G01980 44.068 1.32e-18 78.6
Hean5g03054 ACH,WGDA 1 404 Antiporters gene family AT5G33320 65.931 3.11e-180 506.0
Hean5g03056 ACH,WGDA 1 687 Antiporters gene family AT3G62270 75.827 0.0 1084.0
Hean5g03370 ACH,WGDA 49 388 Antiporters gene family AT1G61800 77.714 0.0 545.0
Hean4g00012 . 23 439 Antiporters gene family AT3G13320 69.647 0.0 601.0
Hean4g00082 . 55 566 Antiporters gene family AT5G17860 43.273 1.93e-143 424.0
Hean4g00230 ACH 1 287 Antiporters gene family AT1G79900 61.616 8.15e-126 359.0
Hean4g00269 ACH 13 619 Antiporters gene family AT1G15460 69.687 0.0 899.0
Hean4g00334 . 299 347 Antiporters gene family AT3G05030 63.265 2.22e-18 74.3
Hean4g00371 . 373 410 Antiporters gene family AT5G12860 81.579 7.38e-16 67.0
Hean4g01438 . 85 132 Antiporters gene family AT3G19490 66.667 1.84e-08 50.1
Hean4g04281 . 58 564 Antiporters gene family AT5G17860 41.049 1.02e-136 409.0
Hean4g04468 . 139 244 Antiporters gene family AT5G33320 66.038 1.49e-37 140.0
Hean4g04568 WGDA 56 576 Antiporters gene family AT3G19490 81.594 0.0 808.0
Hean3g00076 WGDA 44 592 Antiporters gene family AT2G19600 80.501 0.0 849.0
Hean3g00422 . 128 229 Antiporters gene family AT2G47160 77.451 1.17e-47 160.0
Hean3g01257 ACH,WGDA 38 563 Antiporters gene family AT5G64290 78.517 0.0 823.0
Hean3g01427 . 273 367 Antiporters gene family AT5G13490 82.105 7.45e-49 157.0
Hean3g02214 ACH 25 436 Antiporters gene family AT1G55730 61.408 1.39e-175 497.0
Hean3g02227 . 60 98 Antiporters gene family AT3G06370 79.487 1.88e-16 71.2
Hean3g02534 ACH 17 387 Antiporters gene family AT5G54800 74.339 0.0 550.0
Hean3g02588 ACH 34 527 Antiporters gene family AT5G55470 66.194 0.0 674.0
Hean3g02750 . 165 216 Antiporters gene family AT5G54800 76.923 1.26e-20 83.2
Hean3g02972 WGDA 3 542 Antiporters gene family AT3G05030 75.37 0.0 830.0
Hean3g03078 WGDA 1 407 Antiporters gene family AT5G17630 70.602 0.0 551.0
Hean3g03351 ACH,WGDA 30 278 Antiporters gene family AT1G79900 31.9 8.71e-41 142.0
Hean3g03538 . 211 367 Antiporters gene family AT5G13490 84.076 3.73e-87 265.0
Hean3g03556 ACH 8 795 Antiporters gene family AT4G23700 64.051 0.0 999.0
Hean2g00484 ACH 10 404 Antiporters gene family AT5G33320 62.594 1.12e-160 456.0
Hean2g00778 . 905 1021 Antiporters gene family AT2G01980 44.068 1.32e-18 78.6
Hean2g02971 . 83 220 Antiporters gene family AT3G19490 75.362 8.42e-57 184.0
Hean2g02972 . 316 472 Antiporters gene family AT3G19490 75.796 3.09e-78 242.0
Hean1g00192 ACH 27 534 Antiporters gene family AT3G05030 65.098 0.0 673.0
Hean1g00490 . 30 283 Antiporters gene family AT1G79900 30.142 9.62e-36 129.0
Hean1g00736 . 6 447 Antiporters gene family AT2G38170 59.603 1.54e-178 506.0
Hean1g01906 . 1 323 Antiporters gene family AT5G13490 61.61 2.17e-118 343.0
Hean1g02606 WGDA 1 557 Antiporters gene family AT5G12860 81.317 0.0 877.0
Hean1g02681 . 174 207 Antiporters gene family AT3G62270 58.824 8.83e-08 44.3
Hean1g03356 . 132 186 Antiporters gene family AT1G08960 80.0 2.75e-18 76.6
Hean1g03599 . 98 274 Antiporters gene family AT5G64290 61.017 8.48e-74 231.0
Hean1g03749 . 165 223 Antiporters gene family AT1G61800 83.051 5.98e-26 100.0
Hean1g03881 . 9 663 Antiporters gene family AT5G25430 64.179 0.0 874.0