AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01356 ATGATATCCGTTATGAAGCAACGGTTAATGGTTAGGGCGTTTACGAAAACGCTAACGCTGATTCCGCTCTACCGTCCTTCACGCACCGCGTTTTGTACTGCTTCTTCAAGTTTTGCTATCAAGAATGTCACTAAGTCCAACTTTGATTCGTCTCTGGCCGACCTTCGGCGACACGTCCGAGACTCTGATTTTGTGGCGATTGATTTGGAAATGACGGGAGTCACGAGCTCCCCGTGGAGGGAGTCATTTGAGTTTGATAGATTTGATGTTCGGTATCTCAAGGTGAAGGATTCTGCTGAGAAGTTTGCTGTTGTTCAGTTTGGAGTTTGTCCCTTTAGGTGGGACCCAACCAAGCAGTCGTTTATTGCCCACCCGCATAACTTTTACATATTTCCGAGGCAAGAAGTTGGAGCTGACGACTCGTCTTATGAGTTCCTGTGCCAGACTTCCTCAATTGATTTCTTGGCGAAGTACCAGTTTGATTTCAATATGTGCGTGAAAGAAGGAATATCTTATTTATCCAGAGCACAAGAAGCCGATGTTAGGCTCCAGTTACATTCATCACATGAATACGAGCCATTAGACTCACAAGTCACATCTAAAGATATTAAAGATGTTCCGCTGGTCAGAATGGCAGATATTCTTTTTGTGGAGAGAATGAGGAACAAGATCAGTGATTGGCATGATGACCTGTTACAGATTAGAAACGGAGGGTCCCAAAGGACCCCTGAAGATTCTAATGTCTCAGTTAATCAGTTTCAAACTATTTTCTTTAAGACGCGTCCAGCCATCAAATTGGATGCGTTCACTTCCCGCCAACTAAGGTTGATTAAGTCGGTTGTAGAAAAGAGCTTTAATGATTTAGCATACATTCGTGTGAGTGATGGTTCATGTTTTCAACAAATTATCGTCTACACCGACTCTAGATTGGATCGAGACTTGCTTATGAAAGAGGTTAAAGAAAGCCACTTGAAGGAAGCAGAAATGAAGATTGAAGCTGCCATCGGCTTCCGACACGTGATTGACCTCCTTTCCTCTGAACAAAAGTTGATCGTTGGCCATAACTGTTTTCTTGATATTGCACATATATGTAGAAAGTTTGTGGGCCCTCTTCCTTCGAGTCTAGAGGAATATGTACCATTAGTTCAGAATACCTTCCCATTCATAATTGACACGAAAATCCTTCTGAATGCAAATAACATACTGCAATTAAAAATGAAGAAAAGTAGCACGTCACTCGCCAAAGCTTTTGCAATTCTGTGTCCACATATTGCTTCTGGTGTCGGGAGTTTTGGTTCTGCTCTTAATAGTTCTGTTGCTGTAGAGGTTCAAGTCGATGATATGAGGTCATCAAATTGGAACTCGGGAGCTAAACATGAAGCGGGTTACGATGCTTTCATGACAGGCTGTATTTTCGCCCAGTCATGCAATCATCTCGGCATCGATTTCACCTCTCACTCAATGTTGACGAAACAAGACAAGCTTCAACACTACATCAATCATCTATACCTCAGCTGGTCTAGCGGAGACATAGTTGACCTAAAAACCGGTCAAACTAGAACCGAATCTTCCGCACTCAACAGTTACAAGACCCAACAACCGAAGATTCTGTTTCCAAATATCGTCATAATCTGGGGTTTCTTGTCGAAGCTCAAAGCGAGGGAGATTAAAGAATCGTTGACCAAAGTCTTCGGGTTGACTTCCGTTACATCCATCTTCCACTTGGATAAGACCGCTGTGTTTGTTCAGTTTAGCAAACCGGAATTAGTTTCTGATTTCTTGAAACTGAAATCCGAGATGGAGAAGAAGAAGAACGACGCGATTTACGTTCTGCACCCGTTTTCGGACCTTCTAGAAGGTGGGCTTACAGGTGCTGCTTGTTATGAGGTGTATAAAGAGATTTGCGAGTCGCCTGTTTCAAAAGTCTTGTTTGCTGATCAAGCTGAAGCGGTTTGTGTTAATTCGGAAGCGAAAGTGTTGAGAAGTATGGCCCACAAAACTGATTCTTTTGCTGATTCAGAATCTGCAATTGATAGTAAGACAGCAGAAACTAGTGGAGAAATATTAGGTTTGGTATCCTGCTGA 2085 42.64 MISVMKQRLMVRAFTKTLTLIPLYRPSRTAFCTASSSFAIKNVTKSNFDSSLADLRRHVRDSDFVAIDLEMTGVTSSPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDPTKQSFIAHPHNFYIFPRQEVGADDSSYEFLCQTSSIDFLAKYQFDFNMCVKEGISYLSRAQEADVRLQLHSSHEYEPLDSQVTSKDIKDVPLVRMADILFVERMRNKISDWHDDLLQIRNGGSQRTPEDSNVSVNQFQTIFFKTRPAIKLDAFTSRQLRLIKSVVEKSFNDLAYIRVSDGSCFQQIIVYTDSRLDRDLLMKEVKESHLKEAEMKIEAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHICRKFVGPLPSSLEEYVPLVQNTFPFIIDTKILLNANNILQLKMKKSSTSLAKAFAILCPHIASGVGSFGSALNSSVAVEVQVDDMRSSNWNSGAKHEAGYDAFMTGCIFAQSCNHLGIDFTSHSMLTKQDKLQHYINHLYLSWSSGDIVDLKTGQTRTESSALNSYKTQQPKILFPNIVIIWGFLSKLKAREIKESLTKVFGLTSVTSIFHLDKTAVFVQFSKPELVSDFLKLKSEMEKKKNDAIYVLHPFSDLLEGGLTGAACYEVYKEICESPVSKVLFADQAEAVCVNSEAKVLRSMAHKTDSFADSESAIDSKTAETSGEILGLVSC 694
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01356 694 Pfam CAF1 family ribonuclease 43 472 IPR006941 -
Hean11g01356 694 Gene3D - 42 206 IPR036397 GO:0003676(InterPro)
Hean11g01356 694 Gene3D - 239 518 IPR036397 GO:0003676(InterPro)
Hean11g01356 694 PANTHER POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1 40 651 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
Hean11g01356 694 SUPERFAMILY Ribonuclease H-like 40 486 IPR012337 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01356 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:38834245 Hean16g01465 Hean-Chr16:58926739 dispersed