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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01378 ATGCCATATGTATCGTCTTGCAGTAATCGGCGGATTATGCAGTACAAAAGTTCTTATTATTCATTTTACCTTCCAAATGATTATCTAGACACTTTTGGTGACCATAACACGGTTGGAAAGATTGGAACTGATATTGAAGAACGCAAGTGTTCGTGGTTGGTTGCTAAAGCACTCGAACTCGCTAGTGAGGAACAAAAGCAAATTCTATACGAAAACTATGGGAAAAAGGATCAAGCCTGTGTAGCAAAAGTCAAGGAACTATATCATACTCTTAACCTTCAGGGCGTGTATGAAGAATATGAGAAAAAGACCCATGAGGAGTTCATGAACTTAATTGAATCTCACCCAAGCAATGTAGTACAAGCAGTGTTGAAAACTTTCATGGGAAAGATATATAAGAGGCAAAAGTAG 411 37.96 MPYVSSCSNRRIMQYKSSYYSFYLPNDYLDTFGDHNTVGKIGTDIEERKCSWLVAKALELASEEQKQILYENYGKKDQACVAKVKELYHTLNLQGVYEEYEKKTHEEFMNLIESHPSNVVQAVLKTFMGKIYKRQK 136
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01378 136 Gene3D Farnesyl Diphosphate Synthase 26 135 IPR008949 -
Hean11g01378 136 Pfam Polyprenyl synthetase 22 90 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Hean11g01378 136 SUPERFAMILY Terpenoid synthases 22 136 IPR008949 -
Hean11g01378 136 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 27 136 IPR039702 GO:0004161(PANTHER)|GO:0004337(PANTHER)|GO:0005737(PANTHER)|GO:0008299(InterPro)|GO:0016765(InterPro)|GO:0045337(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01378 K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:39446433 Hean5g03461 Hean-Chr5:172059248 dispersed
Hean Hean-Chr11:39343615 Hean11g01378 Hean-Chr11:39446433 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean11g01375 ACH 227 365 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 55.396 4.36e-47 154.0
Hean11g01378 . 225 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 52.5 1.68e-49 160.0
Hean11g01379 . 43 104 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 58.065 5.87e-20 79.3
Hean8g02838 WGDA 19 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 74.044 0.0 569.0
Hean5g03461 ACH,WGDA 42 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 77.843 0.0 560.0
Hean2g00405 . 78 101 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 83.333 5.20e-08 46.6
Hean2g02423 . 78 101 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 83.333 5.10e-08 46.6
Hean1g01647 . 78 101 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 83.333 5.20e-08 46.6
Hean1g03487 . 120 145 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 88.462 2.47e-10 53.5