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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01491 ATGTCCTTCATCTCTAAGGTTCACAGCTTCTCCGGCGACTTGCAAACTCCACCTTCAACCACCCTACCAATGTGGTATGATGACACTACTTCATCTGGTTACTTTGACAAGTATGGGATCACAATGCCTCCGGAATATGACATCAGTACTACACCGTTATCTAGATCTTCATCATGGAAGACTTCATTCCCGGAGCGATTCGGGGTTTCCGAGATGGTGGTTCCTACATCACCCACTGGATTCAGTAGCATTCCTGTAGAAGCTGACTATCAAAAAGTTGAGCATGATGATTATTTTTGTAGTAGTGGTGGCTATGGTACCAACTCATGGTCAACTTATAATCCCACTGCTGCAACTACTAATTGGGAAACTGAGAGCCCGAAAACAATTAAAGAAGTCGAAGAACCGGCTTTGAAGATCGGGAGGTATTCAGCCGAAGAAAGGAAGGACAAGATCATGAGGTATCTCAAGAAGAGAAACCAAAGAAATTTCAACAAGACGATTAAGTATGAATGCCGAAAGACGTTAGCAGACAAGCGTATACGAGTCCGAGGGAGGTTTGCTAAGAACAACAACGAGCATCATCATCATCATCATAATGATCATCAACCTTGTGAAGATCAAGTGCTTCCCAGCAACAACACTGCCAATAATCCTTCCGAAGAAGAGATTCAGCACCTATACACCAACAGCTTTTTGATGAAGCAAGATTATGATGAAGAGGAAGAATGGCTGCAAGAAGCAATGGCTAGTTTATTGTATTAG 765 42.75 MSFISKVHSFSGDLQTPPSTTLPMWYDDTTSSGYFDKYGITMPPEYDISTTPLSRSSSWKTSFPERFGVSEMVVPTSPTGFSSIPVEADYQKVEHDDYFCSSGGYGTNSWSTYNPTAATTNWETESPKTIKEVEEPALKIGRYSAEERKDKIMRYLKKRNQRNFNKTIKYECRKTLADKRIRVRGRFAKNNNEHHHHHHNDHQPCEDQVLPSNNTANNPSEEEIQHLYTNSFLMKQDYDEEEEWLQEAMASLLY 254
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01491 254 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 27 249 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Hean11g01491 254 ProSiteProfiles CCT domain profile. 148 190 IPR010402 GO:0005515(InterPro)
Hean11g01491 254 MobiDBLite consensus disorder prediction 192 219 - -
Hean11g01491 254 Pfam CCT motif 148 190 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01491 K03539 ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:45210077 Hean15g02161 Hean-Chr15:61283819 dispersed
Hean Hean-Chr11:45210077 Hean3g03586 Hean-Chr3:163096992 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g02222 . 3 403 COL gene family AT1G25440 46.0 3.93e-99 301.0
Hean15g01472 . 5 403 COL gene family AT1G25440 45.622 3.93e-99 301.0
Hean11g01491 . 382 426 COL gene family AT1G28050 55.556 1.22e-09 56.2
Hean10g01581 . 262 357 COL gene family AT3G21880 65.049 6.93e-39 132.0
Hean9g00910 ACH,WGDA 270 387 COL gene family AT1G73870 42.5 8.46e-18 83.2
Hean8g00273 . 8 428 COL gene family AT1G28050 37.74 5.84e-86 268.0
Hean8g00601 . 81 403 COL gene family AT1G25440 36.28 1.74e-42 147.0
Hean8g02391 . 286 403 COL gene family AT1G25440 40.678 5.80e-19 82.8
Hean6g00637 WGDA 3 403 COL gene family AT1G25440 43.021 1.12e-87 271.0
Hean4g03881 WGDA 3 403 COL gene family AT1G25440 45.125 4.70e-98 297.0
Hean3g00899 ACH,WGDA 277 389 COL gene family AT1G73870 48.696 1.64e-21 94.4
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean CCT 4.9e-18 CL0281 TR Others