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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01545 ATGTTAAGTTTTAAAAATGAAAAAAAGATCCTTCAATATATAGCGTTATACACGATAAATACATGGGCAAAGACCGTTTTAGAGAATGTATGGTCGTTAATCGGAAGAACAGCCCCACCAGAGTTCTTGGCAAAATTGACATATTTGGTTTGGAACCACCATGAAGAAATAAAACACATTGATACAGTTAGAGCATACACATTCGGGAGTCATTACTTCGTGGAGGTAGACATTGTGTTACCCAAGGATATGATGCTAAGTGAGGCTCATAATATCGGGGAAACGTTGCAAGTAAAACTAGAACAGTTGTCAGAAGTTGAACGGGCATTTGTTCATATCGATTTTGAGTTTACTCACACTCCCGAACATAAGCAAAAGGTTTGA 384 37.5 MLSFKNEKKILQYIALYTINTWAKTVLENVWSLIGRTAPPEFLAKLTYLVWNHHEEIKHIDTVRAYTFGSHYFVEVDIVLPKDMMLSEAHNIGETLQVKLEQLSEVERAFVHIDFEFTHTPEHKQKV 127
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01545 127 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 14 124 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Hean11g01545 127 FunFam Metal tolerance protein 11 36 116 - -
Hean11g01545 127 Gene3D Cation efflux protein, cytoplasmic domain 37 115 IPR036837 -
Hean11g01545 127 Pfam Dimerisation domain of Zinc Transporter 39 114 IPR027470 -
Hean11g01545 127 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 38 114 IPR036837 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01545 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:47147423 Hean3g02731 Hean-Chr3:141243926 dispersed
Hean Hean-Chr11:47147423 Hean13g02571 Hean-Chr13:116982184 transposed