AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g01574 ATGGCATTTCCAATTTTTGATGGACATGTTATTGGCCTTATATCCTATAACCTATCAATCAGGACTCCTAATTCTAAGGAAAAGAACGGCGGCTCAACAGCTGCGGATGATGTGAACAGTGACATCATACCATCAGCATCCATGCTAAAGCAATTAGCAATAGGTGTTGAGACTACAAAAATTGTAAAGTCAATGAAGGATTTGATGATATTAGCAAGAGATTATTCACCAGTGAAAGAGAGAGCTGGTTTGAGCTTATATGCCATGAAGTCTTTTGTAGTTGGGGAGAAAGAAGATAAGTTTGCCGCTGAGTTCGGTCGTGATGAAAAAGTAATGTCTTTTATCCATTTGCTCATGGATCCAGAAGGACATCTTTCGAGAAGGAAAACTAGATCTTGTATGGATAAAGCTCCAAAAGTTACTAAATTTTCCAAAGAAGTTCATGGTGCTCCTCCAGAAAGCTTTGTTCCGGAGCTTGCTGAAGCCATGGGAAGCATAAAAACTTTGAAGAAAATGGCGTTGTTTTGGAGTAGGGTTGTTATGGAATTGAGAAGGCTATGGTGTGAAGGAAAACATATTCCCGGCATCCCAACAGACGAAATTCCAAATTTAAATTCCTGTCTGTTACATCAGCAGTTGCAGGTTATCAATTGCTGTATTTCTAGAAAACAACGCCGCGCTATTGCCACTGCATCACTAGATTCTGTTCTGAAACAAGCCAATAATATTGCTGAATTGTCACATCCTCCTGCGGATCTTCTTCCGGAAAGCCCTCATGTGTATGCTCGAATTAGCTCCGGGAAATTTGTGCTTCGGTTAGGAGCTGACAAACAACTTGAAAACACAACATTATTGGATACTGGTGAACCTGTATACACCCCGGTTATGCAGGAATGGCCGCTTCTCACAGAAGATATCATCAAAGAAACGGAGGAATTTGTATTACGTACAGGGAGTGTTGGTGCAGGGTGTTCTCAGCTTCTTTCCGATATGCAGGCTTTCAAGGCAGCAAATCCAGGGAGCATATTAGAAGATTTCGTAAGATGGCATTCACCCCCTGATTGGACAGAAACAAATGACGAAAGTAAACAAGCTACCGGTGGTGATATTTCGCCTTCTAGAGGACACCTGAGTACACGTATGCAGAAAGAAGGTAATTTATGGCGAGAACTATGGCAAACCGCAAAACCAATACCTGCTATTAGACAGGCTCCGTTATACTATGAGGATTTATCTGTTGAAGGGATTCTGAATGGATTGGAGAATATCTCACCTTCTAGTTTGTTTGAGCAGTTGTTTGTTTCGCTTCTCAGTTCAGGATGCGCAATTGCCGAGGCTAGAGTCTCGAGTAATGAATTTCTGTACAAGGTGTTCAAGGAGTGCAAAGACTATATTGTCCTTATTTGTCAAAGCAAAAATTGGGTCGAGAAAGCCAACGATATATGCCAGGTGTATGAGACGATGGCCGTGATGGCATTGGACCCTGAAAGGGTCATAAAGATCATGAACGCACAGCCTGATCAGACGCATACAAAAGAGGATCCAAATAAGCTCCGGAAAACACCATCAAAGAACCAAAAAGACAACCCAACAGCCGCACAGTCCTCAACAATGTTTTCAAAGAAGCCAGCGAAACCAATCTCCTGCTGA 1650 42.12 MAFPIFDGHVIGLISYNLSIRTPNSKEKNGGSTAADDVNSDIIPSASMLKQLAIGVETTKIVKSMKDLMILARDYSPVKERAGLSLYAMKSFVVGEKEDKFAAEFGRDEKVMSFIHLLMDPEGHLSRRKTRSCMDKAPKVTKFSKEVHGAPPESFVPELAEAMGSIKTLKKMALFWSRVVMELRRLWCEGKHIPGIPTDEIPNLNSCLLHQQLQVINCCISRKQRRAIATASLDSVLKQANNIAELSHPPADLLPESPHVYARISSGKFVLRLGADKQLENTTLLDTGEPVYTPVMQEWPLLTEDIIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGSILEDFVRWHSPPDWTETNDESKQATGGDISPSRGHLSTRMQKEGNLWRELWQTAKPIPAIRQAPLYYEDLSVEGILNGLENISPSSLFEQLFVSLLSSGCAIAEARVSSNEFLYKVFKECKDYIVLICQSKNWVEKANDICQVYETMAVMALDPERVIKIMNAQPDQTHTKEDPNKLRKTPSKNQKDNPTAAQSSTMFSKKPAKPISC 549
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g01574 549 MobiDBLite consensus disorder prediction 510 524 - -
Hean11g01574 549 Pfam Rab3 GTPase-activating protein catalytic subunit 272 421 IPR026147 -
Hean11g01574 549 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 41 534 IPR045700 GO:0005096(PANTHER)|GO:0005096(InterPro)|GO:0043547(PANTHER)|GO:0043547(InterPro)
Hean11g01574 549 MobiDBLite consensus disorder prediction 525 543 - -
Hean11g01574 549 MobiDBLite consensus disorder prediction 503 549 - -
Hean11g01574 549 MobiDBLite consensus disorder prediction 358 377 - -
Hean11g01574 549 MobiDBLite consensus disorder prediction 353 377 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g01574 K18270 Rab3 GTPase-activating protein catalytic subunit
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Event-related genes

Select Gene_1 Gene_2 Event_name
101133 Hean11g01574 Hean5g03399
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:48110152 Hean5g03399 Hean-Chr5:170965284 dispersed