AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g02464 ATGTCAGAAGATAATGCTAATGTACACGAACTCGAGGCAATGCCTGAGAACCCACTTCCAGTTGAAGCTCAATTTCCCAATAACGAAAATGAACAAGAACACGGTGATGATGCACTAAAGACTCAAGAAAACGAAGAAGAAGAACAAGGTGGCGCTGTGGTGGAGGAAGACGGTGGTGCTGCCGCTGCTGCTGCTTCTGCCGAAGGTCTTGTGGAACAGAAATGGCCCGGGTGGCCTGGAGAGAATGTTTACAGGATGTTGGTTCCCGTGCAAAAAGTCGGTGGCATTATTGGCCGTAAGGGAGAGTACATAAAGAAAACTTGTGAAGAAACACGCGCTCGCATTAAAATTCTTGATGGTCCTCCTGGTACTAATGAAAGAGCTGTGTTGATATCCGCTAAGGAAGAACCGGATGTTCCTATTCCTCCTGCGATGGATGGTTTGCTGAAGGTTCATCAACGGGTCCTTGATGCTGACAAGGATTCTGCTCATGCCCCACCTGGAGGCCCCACCTCCATTTGTACAAGGCTACTGGTGGCAGGTGCACAAGGTGGAAGCTTGATAGGGAAGCAGGGTGCCACCATAAAGACCATTCAAGATTCTTCAAATTGTAAAATCAGGGTTATAGGAGAAACTCTCCCAATTTTTGCTCTACCCGATGATAACGTTGTTGAGATACAAGGGGATCCTACAGGTGTGCACACGGCTTTGGAACTGATCGCAACTCATCTAAGAAAGTTTTTAGTTGATCGAAGTGTTATTAGTATATTTGAGATGCAAATGAAAATGCCAAATTCTCGTTCGAATCAGGATATGCCACCTCCCCAACCTTGGGGGGCTCCATCACCTCAAGGTTTCCCGGGTGGTGGGCCTGGTTTCGGACCCGGTTTCGGACCCAATCAGTTTATGCCACCTCAGCACCAATACGACAGCTTCTATCCACGAGTAGACTTACCTCCACCAATGGAGAAACCGCCTCGTCAGGGTCCACCTTACGGCAGGGATCCAACTACAGGACCTCCTCACACTTCAACTGTGCAACCACAACAGTCAATGGTCACAAAGGTCTCACAGAACATGCAAATCCCTCTTTCCTATGCCGACGCTGTCATTGGTACCTCGGGGACTAACATTAGCTATATCAGACGGGCCAGTGGTGCAACCATTGCAATTCAAGAAACAAGGGGCGTTCCTGATGAAATGACTGTTGAGATTAACGGGTCCGCTTCACAAGTTCAGACAGCTCAACAATTGATTCAGAATTTTGTTGCTGAAGCTGCAACTGCCGCTCAGAATTCTACTGCCCAGCCGCCTACTCAAGGAGGTTATAATGCTCCTTATCCTGGTGGTTACCAATCTCAACCGCCGCCTACTGCTGACTATGGTGGAGCTGTGTATGGAGGGAATTATGGGTATTGA 1419 48.2 MSEDNANVHELEAMPENPLPVEAQFPNNENEQEHGDDALKTQENEEEEQGGAVVEEDGGAAAAAASAEGLVEQKWPGWPGENVYRMLVPVQKVGGIIGRKGEYIKKTCEETRARIKILDGPPGTNERAVLISAKEEPDVPIPPAMDGLLKVHQRVLDADKDSAHAPPGGPTSICTRLLVAGAQGGSLIGKQGATIKTIQDSSNCKIRVIGETLPIFALPDDNVVEIQGDPTGVHTALELIATHLRKFLVDRSVISIFEMQMKMPNSRSNQDMPPPQPWGAPSPQGFPGGGPGFGPGFGPNQFMPPQHQYDSFYPRVDLPPPMEKPPRQGPPYGRDPTTGPPHTSTVQPQQSMVTKVSQNMQIPLSYADAVIGTSGTNISYIRRASGATIAIQETRGVPDEMTVEINGSASQVQTAQQLIQNFVAEAATAAQNSTAQPPTQGGYNAPYPGGYQSQPPPTADYGGAVYGGNYGY 472
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g02464 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 252 IPR036612 GO:0003723(InterPro)
Hean11g02464 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 73 135 IPR036612 GO:0003723(InterPro)
Hean11g02464 472 ProSiteProfiles Type-1 KH domain profile. 81 148 - -
Hean11g02464 472 CDD KH-I-PEPPER-like-rpt3 355 423 - -
Hean11g02464 472 MobiDBLite consensus disorder prediction 29 47 - -
Hean11g02464 472 MobiDBLite consensus disorder prediction 430 462 - -
Hean11g02464 472 ProSiteProfiles Type-1 KH domain profile. 355 419 - -
Hean11g02464 472 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 39 429 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Hean11g02464 472 ProSiteProfiles Type-1 KH domain profile. 172 240 - -
Hean11g02464 472 CDD KH-I-PEPPER-rpt2-like 175 245 - -
Hean11g02464 472 SMART kh-6 171 245 IPR004087 GO:0003676(InterPro)
Hean11g02464 472 SMART kh-6 80 160 IPR004087 GO:0003676(InterPro)
Hean11g02464 472 SMART kh-6 354 424 IPR004087 GO:0003676(InterPro)
Hean11g02464 472 MobiDBLite consensus disorder prediction 270 284 - -
Hean11g02464 472 MobiDBLite consensus disorder prediction 318 337 - -
Hean11g02464 472 Pfam KH domain 358 420 IPR004088 GO:0003723(InterPro)
Hean11g02464 472 Pfam KH domain 84 136 IPR004088 GO:0003723(InterPro)
Hean11g02464 472 Pfam KH domain 176 240 IPR004088 GO:0003723(InterPro)
Hean11g02464 472 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 347 427 IPR036612 GO:0003723(InterPro)
Hean11g02464 472 CDD KH-I-PEPPER-rpt1-like 81 149 - -
Hean11g02464 472 Gene3D - 81 250 - -
Hean11g02464 472 Gene3D K Homology domain, type 1 343 431 IPR036612 GO:0003723(InterPro)
Hean11g02464 472 MobiDBLite consensus disorder prediction 264 350 - -
Hean11g02464 472 MobiDBLite consensus disorder prediction 1 67 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g02464 K21444 poly(rC)-binding protein 3/4
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Event-related genes

Select Gene_1 Gene_2 Event_name
101186 Hean11g02464 Hean15g00399
402254 Hean11g02464 Hean1g00371
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:107409501 Hean5g00778 Hean-Chr5:30753085 dispersed
Hean Hean-Chr15:6656830 Hean11g02464 Hean-Chr11:107409501 transposed
Hean Hean-Chr1:10715726 Hean11g02464 Hean-Chr11:107409501 wgd