AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g02472 ATGTCGAAGAGTTTGTGGTGGATCGGTTGCTTTTTTATTATTCTACACTTATCCTCCTTTTGGGTCTCTGGGATTGATGATTTCAATCAAGCGTTTCCTATCATTGAACCGGATCCTGGTCATACAAAACTCCGTCTTTCTAGTGAAGGACTGGAGGCTATTCGTAGAATAACTAATCCTATTGCAGCCGTGGCCGTAATTGGACCATATCGATCTGGAAAGTCTTTTTTGCTTAACCAGCTTCTCTCACTTTCTTGTTATGAAGGTTTTGGTGTTGGCCACATGCGCGATACTAAAACTAAAGGAATATGGGTATGGGGAACTCCGGTTGAGATGGATATTGATGGAGTGAAAACATCTGTCTTTTATCTTGACACAGAGGGGTTCGAAAGTATAGGGAAATCAAACGTCTATGATGACAGAATATTTGCTCTCGCAACGGTTTTGAGTTCTGTTCTTATATACAATTTGCCTGAGACGATACGTGAAGCTGATATATCCCGATTGTCATTTGCTGTTGAGCTTGCTGAAGAGTTCTATGGAAGAGTAAAGGGGCAAGATGTGGCGTTTGAACCAGCAAAACTCTTGTGGCTTATACAACGTGACTTCTTACAGGGGAAGTCTGTAAAAGAAATGGTAGATGAAGCTCTACGACATGTTCCTAACCATGATGGTGACAGAAATATTGACCAGGTCAACCAAATTCGGGACTCTCTAGCTATCATGGGCGACAATAGCACAGCTTTCAGCTTACCACAACCGCATCTCCAAAGGACAAAGCTGTGTGACTTGAAAGACGGGGAGCTTGACCAGAGTTATGTCCAAAAGAGAGAGCAGTTGAAAGAAGTTGTTAAATCTGTTATTCGTCCGAAGATTGTACAGGGAAAATCACTTAATGGAAACGAGTTTGTATCCTTTCTTGAAAAGATTTTAGAAGCATTAAACAAGGGGGAGATTCCCTCAACAGGGTCTCTTGTGGAGGTATTCAACAAGAAAATATTGGAGGGATGTCTGAAGCTATACGAGGATAGCATGACGAAAGTGATTTTACCGATTCACGAGGAATCTTTACAATCCATCCATGAAGCTTCAAAAGCCGAATCTCTGAAATCTTTTGACGAACAACATTTTGGCCGTCACCATGCCAAGAAATCCGTTGAAACACTCGATGAAGATATCGAAAAGATGTTTAAGAATTTTGTGATGGCAAACCAATATCAGTCGTCAAAACTGTGTGAGGCACTCTATACAAAGTGCGAGGACCAAATGGACCAACTTCAAGTACTCAGACTACCGTCGATGGCCAAGTTTAACGCAGGCTTCCTTCACTGCAACCAAAGTTTTGGAAAAGAGTGCGTCGGGCCATCTAAAACCATATATGAGCAACGAATGGTGAAGATGATGGGAAAGTCGAAGTCTTCGTTTATAAAGGAATACAATCACAGACTATTTAATTGGTTGGTGGCCTTTTCACTTGTAATGGTGATCGTGGGTCGTTTTATCATAAAGTTCATTTTGATTGAGATCGGGGCGTGGATACTCTTCATCTTTTTGGAGACGTACACACGGATGTTCTGGTCACCCGAGTCTCTTTATTACAATCCCGTCTGGCATGGTATAGTAGCCACTTGGGAAACACTTGTTTACAGCCCTGTTCTCGATTTGGACAGATGGGCGATACAGATTGGATTCGTCTCAGTAGTATTGTTGGTATACTGGCGGTGCTGTGCAAGGAGGAAACACAAGCCAAAACACGGGCCCCACTCAGTGTTACCATTGTATAACAACGCTTCAAGAGGTCGGGATAGATCAGAATAA 1818 42.3 MSKSLWWIGCFFIILHLSSFWVSGIDDFNQAFPIIEPDPGHTKLRLSSEGLEAIRRITNPIAAVAVIGPYRSGKSFLLNQLLSLSCYEGFGVGHMRDTKTKGIWVWGTPVEMDIDGVKTSVFYLDTEGFESIGKSNVYDDRIFALATVLSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLLWLIQRDFLQGKSVKEMVDEALRHVPNHDGDRNIDQVNQIRDSLAIMGDNSTAFSLPQPHLQRTKLCDLKDGELDQSYVQKREQLKEVVKSVIRPKIVQGKSLNGNEFVSFLEKILEALNKGEIPSTGSLVEVFNKKILEGCLKLYEDSMTKVILPIHEESLQSIHEASKAESLKSFDEQHFGRHHAKKSVETLDEDIEKMFKNFVMANQYQSSKLCEALYTKCEDQMDQLQVLRLPSMAKFNAGFLHCNQSFGKECVGPSKTIYEQRMVKMMGKSKSSFIKEYNHRLFNWLVAFSLVMVIVGRFIIKFILIEIGAWILFIFLETYTRMFWSPESLYYNPVWHGIVATWETLVYSPVLDLDRWAIQIGFVSVVLLVYWRCCARRKHKPKHGPHSVLPLYNNASRGRDRSE 605
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g02472 605 PANTHER GUANYLATE BINDING PROTEIN 31 553 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Hean11g02472 605 FunFam Guanylate-binding family protein 26 294 - -
Hean11g02472 605 FunFam Guanylate-binding family protein 295 427 - -
Hean11g02472 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 291 IPR027417 -
Hean11g02472 605 MobiDBLite consensus disorder prediction 581 605 - -
Hean11g02472 605 ProSiteProfiles GB1-RHD3-type guanine nucleotide-binding (G) domain profile. 58 178 IPR030386 GO:0005525(InterPro)
Hean11g02472 605 CDD GBP 55 284 - -
Hean11g02472 605 Pfam Guanylate-binding protein, C-terminal domain 295 424 IPR003191 GO:0003924(InterPro)|GO:0005525(InterPro)
Hean11g02472 605 SUPERFAMILY Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 294 515 IPR036543 GO:0003924(InterPro)|GO:0005525(InterPro)
Hean11g02472 605 Gene3D - 27 294 IPR027417 -
Hean11g02472 605 Pfam Guanylate-binding protein, N-terminal domain 43 281 IPR015894 GO:0003924(InterPro)|GO:0005525(InterPro)
Hean11g02472 605 Gene3D - 295 427 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g02472 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
402257 Hean11g02472 Hean1g00354
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr4:1882537 Hean11g02472 Hean-Chr11:107899327 transposed
Hean Hean-Chr4:10009565 Hean11g02472 Hean-Chr11:107899327 transposed
Hean Hean-Chr4:63823136 Hean11g02472 Hean-Chr11:107899327 transposed
Hean Hean-Chr9:40802049 Hean11g02472 Hean-Chr11:107899327 transposed
Hean Hean-Chr2:84447705 Hean11g02472 Hean-Chr11:107899327 transposed
Hean Hean-Chr1:10014192 Hean11g02472 Hean-Chr11:107899327 wgd