AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g02521 ATGGATATGGATTCAGTTAAGCTATGGCCTCCAAGCCACAGCACGAGGCTAATACTCGTGGAGCGAATCATAAAAAACCTTTCAACTCCGTCCATTATATCACGAAAATACGGGCTTTTAAGTAAAGAAGAAGCAGAGGAAGATGCCAAACAAATTGAATCTGCAGCCTTTGTGGCTGCAACCCAACACTTTGAAAAAGAACCCGAGAGTGATGGAGGATCTGCAGTCCAAGTTTATGCGAAAGAATCCAGTAAACTAATGGTAGAGTTTCTCAAAACCGGGCCCAAACACAAAGAAGACCGAGACACTATACCAGGGTTAACTACATCAAACCATGAACACGTGTTTGATATTTCTGGAGGGCGTCGGGCCTTCATTGATGCAGAAGAGGCTAAAGAGCTGCTAAAACCATTAAAAGAGCCGGGAAACAAATTCACGAAAATTCGCTTTAGCAATAGAAGTTTCGGGCTACCAGCAGCCCATGTTGCTGCAACGGTCTTGTCATCTGTTAAAGATCAGTTGACCGAAGTTGACTTATCGGATATTGTTTCTAGGAGGCCTGAGCCTGAGGCTATTGGGGTTATGCAGATGTTTTCATCAGCACTCGAGGGTGCTCAGCTGAGTGCTTTAAATTTATCGAATAATGCTTTGGGCGAGAAGGGGGTTCGGGCTTTTGGGGCTCTTTTGAAGTCTCAAGGTAATCTTGTTGAGCTAAGTTTTATGAATGCTGGGATCTCACATGAAGCTGCAAAGGCGGTTTGCGAGTTGATTCCTTCGACAAGTAAACTTAAGATTCTTCAGTTTCATCATAACATGATGGGAGATGAAGGTGCAATCGCCATTGCTCAACTTGTCAAAGGATCGCCAAATCTAGAGGATTTCAGGTGTTCCTCCACAAGAATTGGGTCAGCAGGGGGGGTTGCACTAGCTGAAGCACTTAAAACATGTACCCTTCTGAAGAAACTGGACTTACGTGACAACATGTTTGGACCAAAACCGGGGGTTTCTTTGGGTAACGCTCTTCACGCAAATCTTACAGAAATCTACCTCAGTTACTTGAACTTGGAAAACGAAGGAAGCATAGCCCTTGCGAATGCACTAAAACAATCCAAATCTGCCCTCGAGATCATAGAGATGGCTGCAAACAACATCACTTCAGAAGCAGCAGCCAAAGCATTGGCTGACTGCATGATCTCAAACAAACAATCTCTGACCCGAATAAACTTGTCTGAAAATGAAATAAAAGACGCGGGTGCTATAGTGATTGCCAAAGCACTTGAAGACGCGTTTGAGCGATTGTGTGTGGTCGATCTGAGCACCAATGGGATTGAAACAGGTGGAGCTATGGCATTGGCTAAAGCGGTTGTGGGGAAGCCGGGATTTAGGCTGCTAAACATTAATGGCAACTTTTTATCTTCTAAAGGCATTCAGGGTGTTAGAGAGATATTTAAGGATTTCCCTCGTATGCTTGGACCGCTCGATGAGAATGATCCTCGTGGGGACGGATTCGATGAACTTGAATCGAAGCTCAAGGACCTTGAAATGAAGCAGAAAGAATAA 1560 44.36 MDMDSVKLWPPSHSTRLILVERIIKNLSTPSIISRKYGLLSKEEAEEDAKQIESAAFVAATQHFEKEPESDGGSAVQVYAKESSKLMVEFLKTGPKHKEDRDTIPGLTTSNHEHVFDISGGRRAFIDAEEAKELLKPLKEPGNKFTKIRFSNRSFGLPAAHVAATVLSSVKDQLTEVDLSDIVSRRPEPEAIGVMQMFSSALEGAQLSALNLSNNALGEKGVRAFGALLKSQGNLVELSFMNAGISHEAAKAVCELIPSTSKLKILQFHHNMMGDEGAIAIAQLVKGSPNLEDFRCSSTRIGSAGGVALAEALKTCTLLKKLDLRDNMFGPKPGVSLGNALHANLTEIYLSYLNLENEGSIALANALKQSKSALEIIEMAANNITSEAAAKALADCMISNKQSLTRINLSENEIKDAGAIVIAKALEDAFERLCVVDLSTNGIETGGAMALAKAVVGKPGFRLLNINGNFLSSKGIQGVREIFKDFPRMLGPLDENDPRGDGFDELESKLKDLEMKQKE 519
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g02521 519 Pfam WPP domain 5 100 IPR025265 -
Hean11g02521 519 Gene3D Ribonuclease Inhibitor 121 394 IPR032675 -
Hean11g02521 519 SMART LRR-RI-2 260 287 - -
Hean11g02521 519 SMART LRR-RI-2 232 259 - -
Hean11g02521 519 SMART LRR-RI-2 316 343 - -
Hean11g02521 519 SMART LRR-RI-2 430 457 - -
Hean11g02521 519 SMART LRR-RI-2 344 369 - -
Hean11g02521 519 SMART LRR-RI-2 204 231 - -
Hean11g02521 519 SMART LRR-RI-2 288 315 - -
Hean11g02521 519 SMART LRR-RI-2 371 399 - -
Hean11g02521 519 SMART LRR-RI-2 458 485 - -
Hean11g02521 519 SMART LRR-RI-2 401 428 - -
Hean11g02521 519 Gene3D Ribonuclease Inhibitor 395 489 IPR032675 -
Hean11g02521 519 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 4 518 IPR045203 GO:0005096(InterPro)
Hean11g02521 519 SUPERFAMILY RNI-like 115 500 - -
Hean11g02521 519 Gene3D WPP domain 5 103 IPR038214 -
Hean11g02521 519 Pfam Leucine Rich repeat 262 282 IPR001611 GO:0005515(InterPro)
Hean11g02521 519 Pfam Leucine Rich repeat 401 423 IPR001611 GO:0005515(InterPro)
Hean11g02521 519 Pfam Leucine Rich repeat 207 225 IPR001611 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g02521 K14319 Ran GTPase-activating protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
402266 Hean11g02521 Hean1g00267
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:111783582 Hean4g03365 Hean-Chr4:178547256 dispersed
Hean Hean-Chr11:111731762 Hean11g02521 Hean-Chr11:111783582 proximal
Hean Hean-Chr1:7068814 Hean11g02521 Hean-Chr11:111783582 wgd