AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean11g02682 ATGGTTGCACCTGTGGCGGATCGAACGCCGGCAATGATGATTCCGGCGACGGCGGTACAGCCGGCGGCGGTGATGCCGGAGGCGTACGCGAAGGACGCGATAATCTCGTGGTTTCGTGGCGAGTTTGCGGCGGCGAACGCGATAATCGATGCGTTGTGTGGACATTTGTCGCAGTTAGAAGGCGGAAGGTGTGAATATGAGGCGGTGTTTGCGGCGATTCATCGGCGCCGGTTGAATTGGATCCCGATTCTTCAGATGCAGAAGTTTTTTTCGATTGCGGATGTGACGGTGGAGCTGGAGAAGGTAGCGGAGAAGGTGAAGGTTCCGGTGGTGGAGATGAAGCGTGAGATTGTGGTGGAGGAACCGGTGGAAATTATGGATGTTAATGGTGGTGGTGAGGTGGTTGATGACGATTTGTTCAAGGATTATTCGCCGAAAAGCGGGATTACAGATGCAGGATCTCAAGAAGTGAATTCGGCAGCAGAAAGCATTGAAGTATGCTCAAACCAAGAAGATTGGGAAGCGCGCCGGGCTGAAATGAAGCTAACGAAAGGGTTTGCAGCCAAGGAGTCTGTAAAAGGACATATGGTGAATGTGGTGAGAGGGTTGAAGTTGTACGAGGACATACTTAACGCGACAGAGCTATCTAAGCTGACCGACTATGTAACTGAACTCAGAATTGCTGGCCAAAATGGTGAACTCTCAGGTGAGACTTTTATCATGTACAACCAGCAGTCAAAGGCAATCAAGAGAGAACTTATTCAGTTTGGAGCTCCTATTTTTGGACAGATTAAAGATGATCAAGCTAGCAATATCGACCCGATTCCTGCTCCTCTTGAAGCTATCATTGACCATCTAATTCAGCTTCACTTAATTTCTGAAAACAGAAGACCCAACAGCTGCATCATAAACTTTTTTGATGAGGGAGAATTTTCACAGCCTTTCTTGAAACCACCACATCTAGAGCAACCTATCTCAACAATTGTTTTATCCGAATCTACAATGGCTTTCGGGCGTAGTCTAGTCTGTGATAATGAAGGCAACTATAAAGGACCCCTCATGCTTTCTCTTAAGGAAGGGTCACTCTTAGTGATGAGGGGAAACAGTGCGGACATGGCACGCCACGCCATGTCCCAGTCTCCAACTAAGCGAATCAGCATTACATTTTTCAAAGTCCGAATAGACAAAAGCCCACCCTCAAAAGATCCCATGGCCGGAGCCATGACCGTATGGCAGCCAAGCCTTCCAACGGGCGATTTGGTCCACGTTCTTCCCAAATGGGGTGCCATTCGAGCCCCACAACTTCTTATGTTAGCACCGGTCCCTCCCATGGTTATGAGCCCAAGAAGGCTACCACGTGGAGGGACTGGTGTTTTCTTACCATGGAACAATGGGTCTAAAAAACAAACTAAACATCTACCTCCCCGTGCTCAAAGGGGGCGTCTTCTAGCATTGTCTGCACCCACTGAACCACACAAAATAAACAAAACCCCTGATTCTGTCATTAGCGTTGCTTGA 1518 48.35 MVAPVADRTPAMMIPATAVQPAAVMPEAYAKDAIISWFRGEFAAANAIIDALCGHLSQLEGGRCEYEAVFAAIHRRRLNWIPILQMQKFFSIADVTVELEKVAEKVKVPVVEMKREIVVEEPVEIMDVNGGGEVVDDDLFKDYSPKSGITDAGSQEVNSAAESIEVCSNQEDWEARRAEMKLTKGFAAKESVKGHMVNVVRGLKLYEDILNATELSKLTDYVTELRIAGQNGELSGETFIMYNQQSKAIKRELIQFGAPIFGQIKDDQASNIDPIPAPLEAIIDHLIQLHLISENRRPNSCIINFFDEGEFSQPFLKPPHLEQPISTIVLSESTMAFGRSLVCDNEGNYKGPLMLSLKEGSLLVMRGNSADMARHAMSQSPTKRISITFFKVRIDKSPPSKDPMAGAMTVWQPSLPTGDLVHVLPKWGAIRAPQLLMLAPVPPMVMSPRRLPRGGTGVFLPWNNGSKKQTKHLPPRAQRGRLLALSAPTEPHKINKTPDSVISVA 505
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean11g02682 505 SUPERFAMILY Clavaminate synthase-like 194 389 - -
Hean11g02682 505 Gene3D - 186 397 IPR037151 -
Hean11g02682 505 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 28 489 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean11g02682 K10767 mRNA N6-methyladenine demethylase [EC:1.14.11.53]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
402294 Hean11g02682 Hean1g00254
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:123034289 Hean4g03328 Hean-Chr4:176710664 dispersed
Hean Hean-Chr10:113701699 Hean11g02682 Hean-Chr11:123034289 transposed
Hean Hean-Chr16:200368167 Hean11g02682 Hean-Chr11:123034289 transposed
Hean Hean-Chr1:6565906 Hean11g02682 Hean-Chr11:123034289 wgd