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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean14g01750 ATGAAGCCTGCATGGTTGGAAGGGTTGATAGGGGAGAGCTTCTTTGGGATATGTAGGTTTCATGAGAATAAAAGAAAGAATGAAAAAAACATATTTTGCTTGGATTGTTGTCAAAGCTTCTGCCCTCACTGTCTTCCTACTCATCACTCTCATCCACTTCTTCAGGTGAGAAGATATGTTTACCAGGATGTTGTTAGATTAGATGATCTCGAAAAGCTCATTGACTGTTCTTTTGTTCAGCCTTACACAATAAACAGTGCAAAAGTCATATTCTTGAACCAGAGGGCACAAAGCAGGTCTTGCAAGGGCCCTGCAAATTCATGCTTCACTTGTGACAGAATTCTACAAGAGCCATTTCACTTCTGCTCACTTTCTTGCAAGGTTGATCACATGGTGTATCAAGGGGAGGATTTGTCTGGCATCTTGTGTAGGTTTGATGTGACTGACTTTGCCTTCTCACAATTGGAAGGACTTAGGATGGACGTTTCGGAGTTCGGTGATGACTACGGCCAGATCACCCCCGACTCCATCCTTGTAGACTTTAAAGACTCGTCGGGATCTGATAATGGGATTATATATAAACCGGATGTCGAGAAAAAGAAGAAGAAGAAAAACAATGACTTCATTCCTAAATTCTTTTCCTTTGGTAGCAGAAGAAAAGGAGCCCCCCAACGGTCACCTCTTTCTTAA 690 42.03 MKPAWLEGLIGESFFGICRFHENKRKNEKNIFCLDCCQSFCPHCLPTHHSHPLLQVRRYVYQDVVRLDDLEKLIDCSFVQPYTINSAKVIFLNQRAQSRSCKGPANSCFTCDRILQEPFHFCSLSCKVDHMVYQGEDLSGILCRFDVTDFAFSQLEGLRMDVSEFGDDYGQITPDSILVDFKDSSGSDNGIIYKPDVEKKKKKKNNDFIPKFFSFGSRRKGAPQRSPLS 229
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean14g01750 229 Pfam PLATZ transcription factor 57 128 IPR006734 -
Hean14g01750 229 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 228 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean14g01750 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr14:105263719 Hean3g00464 Hean-Chr3:20116791 dispersed
Hean Hean-Chr14:105263719 Hean8g00913 Hean-Chr8:20122414 transposed
Hean Hean-Chr14:105263719 Hean12g01636 Hean-Chr12:40053972 transposed
Hean Hean-Chr14:105263719 Hean13g01105 Hean-Chr13:61432179 transposed
Hean Hean-Chr14:105263719 Hean2g02279 Hean-Chr2:140299911 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean PLATZ 1.4e-26 No_clan TF PLATZ