AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g01307 ATGTTCCACAAGATACTTAACCGGCTTCCTAAAAAGCCACAGAAGTCAAACGATAATCGAGATGGAGGAAACCATAACACGTCTTCGCATACATCAACTAGTTCAAGAACCAACAATGACGTGCCGATTACTCGATCCAGTACTTCGAACCAGACATCTGGTCAATCCCAAATCGTTCAAAATCACACCAACAAGAAGGTTCTTCAATCTCAAAACTCGAAACTGAACGGGATTTCCACGATTCCCAACACATATGAGGCGTTACCTAGTTTGAAAGACGTTCCAACTTCCGAGAAGCAGAATTTATTCATTCGAAAGTTGACTTTGTGTTGCGTCGTGTTTGACTTTACCGACCCCACCAAGAATTTGAAGGAAAAAGAGATCAAACGACAAACACTGACCGAGCTTGTTGATTACGTCACTTCCGCAAACGGGAAATTTCCTGAAATCGTTATGCAAGAAATCGTGAAAATGGTGTCTGTAAATATCTTTCGTAGGCTTACTCCGCAACCGCGCGATAACAAAGTTCTAGAAACTTTCGACGGGGAAGAAGAAGAACCGTCGATGGACCCCGCATGGCCGCACTTACAGTTAGTCTATGAATTCATTCTAAGATTCGTAGCATCACCGGAAACCGATCCGAAACTTGCTAAACGTTACATTGATCACGCCTTTGTTTTAAAATGGCTAGACTTATTCGACTCAGAGGATCGGCGAGAACGCGAATATTTGAAATTCGTTCTTCATCGAATGTACGGAAAGTTCATGGTGCACCGCCCGTTCATCAGAAAAGCAATCAACAACATTTTTTTCCGTTTTGTTTTCGAAACCGAAAAGCATAACGGGATCGCTGAATTGTTGGAGATATTGGGAAGTATTATTAACGGATTTGCGTTACCGTTGAAAGAAGAACATAAGCTGTTTCTTGTGAGGGCTTTGATACCGCTTCATAAGCCAAAATGCATACCGATGTATCACCAACAAATATCGTATTGTATTACACAATTTGTGGAAAAAGATTGCAAACTTGCGGATACGGTTATTAGGGGTTTGTTGAAATATTGGCCGATCACAAACAGTTCGAAAGAGGTTATGTTTTTAAGTGAGCTTGAAGAAGTTTTGGAAGCAACTCAGCTTCCTGAGTTTCAAAGATGTATGGTGCCGCTATTTCACCAAATTGCGCGTTGCTTGAGCAGTTCACACTTTCAGGTGGCCGAGAGAGCATTATTCCTATGGAACAATGATCATATAGACAACTTAATAAAACAGAACCGAAAGGTGATCCTACCGATCATATTTCCAGCACTAGAAAGCAACACAAAGACACATTGGAACCAAGTGGTACTAAGTTTGACTTTGAACGTCAGAAAGATCTTTTCGGACGTTGACCCTCAACTGTTTGAAGAATGCTCTAAAAAGTTCAAAGAAGACGAGCTTAAGAAGGAAGAAAGCAAGCTAAGACGAGACGCCATATGGAAACGGCTTGAACTAGCAGCTCAGGGTCATGAACAGGTCATGTCTCAGAAGCTAATCGCAAACCATGTTTCAGCGTCTGGCTAG 1560 41.73 MFHKILNRLPKKPQKSNDNRDGGNHNTSSHTSTSSRTNNDVPITRSSTSNQTSGQSQIVQNHTNKKVLQSQNSKLNGISTIPNTYEALPSLKDVPTSEKQNLFIRKLTLCCVVFDFTDPTKNLKEKEIKRQTLTELVDYVTSANGKFPEIVMQEIVKMVSVNIFRRLTPQPRDNKVLETFDGEEEEPSMDPAWPHLQLVYEFILRFVASPETDPKLAKRYIDHAFVLKWLDLFDSEDRREREYLKFVLHRMYGKFMVHRPFIRKAINNIFFRFVFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCIPMYHQQISYCITQFVEKDCKLADTVIRGLLKYWPITNSSKEVMFLSELEEVLEATQLPEFQRCMVPLFHQIARCLSSSHFQVAERALFLWNNDHIDNLIKQNRKVILPIIFPALESNTKTHWNQVVLSLTLNVRKIFSDVDPQLFEECSKKFKEDELKKEESKLRRDAIWKRLELAAQGHEQVMSQKLIANHVSASG 519
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g01307 519 MobiDBLite consensus disorder prediction 20 59 - -
Hean15g01307 519 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 88 499 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Hean15g01307 519 PIRSF PP2A-B56 1 518 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Hean15g01307 519 Gene3D - 95 497 IPR011989 -
Hean15g01307 519 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 95 498 - -
Hean15g01307 519 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 502 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Hean15g01307 519 MobiDBLite consensus disorder prediction 1 59 - -
Hean15g01307 519 SUPERFAMILY ARM repeat 100 481 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g01307 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Event-related genes

Select Gene_1 Gene_2 Event_name
102115 Hean14g02964 Hean15g01307
102468 Hean15g01307 Hean7g02379
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:31903555 Hean3g02051 Hean-Chr3:115869824 dispersed
Hean Hean-Chr14:144099046 Hean15g01307 Hean-Chr15:31903555 wgd
Hean Hean-Chr15:31903555 Hean17g01905 Hean-Chr17:49008075 wgd
Hean Hean-Chr15:31903555 Hean7g02379 Hean-Chr7:132132777 wgd
Hean Hean-Chr15:31903555 Hean8g00148 Hean-Chr8:1851206 wgd