AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g01312 ATGGGATCCAATCAAGCAGCAGTTTCCTTCCTCACAAACCTCGCACGCGCCGCCTTTGGCATCGGCACCGCCGCAACCGTCGCCAGTTCCGCCCTCTACACCGTCGATGGCGGCCAACGCGCCGTCCTCTTCGACCGTTTCCGCGGTGTTATTGACGACACCGTCGGCGAAGGTACTCACTTCCTCATTCCATGGCTCCAAACGCCTTACATCTTCGACATCCGCACCAGACCTCACACTTTCTCCTCAATCTCCGGCACAAAAGACCTCCAAATGGTTAACCTAACCCTTAGGGTTTTATCTCGACCTGAGGTTAATAACTTACCGTCGATTTTCAAAACCCTAGGGCTTGAGTATGACGAGAAAGTGCTTCCGTCGATCGGAAACGAGGTGTTGAAGGCGGTTGTGGCGCAGTTTAACGCGGATCAGCTGTTGACGGAGCGGCCGCAGGTGTCGGCGTTGGTGCGAGAGAGTTTGATACGGAGAGCTAAGGATTTTAACATTGTGCTTGATGACGTGGCGATTACGCATTTATCGTATGGTGCGGAGTTCTCTAAGGCGGTGGAGCAGAAGCAAGTGGCGCAGCAGGAGGCGGAGAGGTCTAAGTTTGTGGTGGCGAAGGCGGAGCAGGAACGTCGTGCGGCGATTATTAGGGCGGAAGGGGAGAGTGAGAGTGCGAAACTGATTTCGGATGCCACCGCGGCTGCTGGAATGGGATTGATTGAGTTGAGGAGGATTGAGGCGTCTAGGGAGATTTCGTCGACTTTGGCGAGGAGTGGGAATGTTACTTATTTGCCGGGGAGTGGTAGCCAGATGCTTCTTGGGCTTAATCCGGGTCGTTGA 843 54.57 MGSNQAAVSFLTNLARAAFGIGTAATVASSALYTVDGGQRAVLFDRFRGVIDDTVGEGTHFLIPWLQTPYIFDIRTRPHTFSSISGTKDLQMVNLTLRVLSRPEVNNLPSIFKTLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRESLIRRAKDFNIVLDDVAITHLSYGAEFSKAVEQKQVAQQEAERSKFVVAKAEQERRAAIIRAEGESESAKLISDATAAAGMGLIELRRIEASREISSTLARSGNVTYLPGSGSQMLLGLNPGR 280
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g01312 280 Coils Coil 191 211 - -
Hean15g01312 280 CDD SPFH-prohibitin 32 226 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 Pfam SPFH domain - Band 7 family 34 211 IPR001107 -
Hean15g01312 280 Gene3D Band 7 domain 60 194 IPR036013 -
Hean15g01312 280 PANTHER PROHIBITIN 4 277 IPR000163 GO:0005739(PANTHER)|GO:0007005(PANTHER)|GO:0016020(InterPro)
Hean15g01312 280 PRINTS Prohibitin signature 210 226 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 PRINTS Prohibitin signature 75 91 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 PRINTS Prohibitin signature 116 134 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 PRINTS Prohibitin signature 139 155 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 PRINTS Prohibitin signature 187 210 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 PRINTS Prohibitin signature 162 181 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 PRINTS Prohibitin signature 93 112 IPR000163 GO:0016020(InterPro)
Hean15g01312 280 SMART PHB-4 31 192 IPR001107 -
Hean15g01312 280 FunFam Prohibitin 2 60 194 - -
Hean15g01312 280 SUPERFAMILY Band 7-SPFH domain 63 199 IPR036013 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g01312 K17080 prohibitin 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
102471 Hean15g01312 Hean15g03328
102472 Hean15g01312 Hean9g02141
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:32016582 Hean17g03153 Hean-Chr17:123577348 dispersed
Hean Hean-Chr17:94929564 Hean15g01312 Hean-Chr15:32016582 transposed
Hean Hean-Chr15:32016582 Hean15g03328 Hean-Chr15:114701528 wgd
Hean Hean-Chr15:32016582 Hean17g01911 Hean-Chr17:49162501 wgd
Hean Hean-Chr15:32016582 Hean9g02141 Hean-Chr9:120417985 wgd