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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g01330 ATGAAGCAAGGTGTGAAAATCGCAAACTTTGGTTCAATCATACTGATTTCTGGATCGAATTTTGTTCATGAGGTGTCACAAGCTTCATCAGATGTGTGGGTGGTTGTTGTGTTATACAAAGATGGGTATCCTGAATGTGGTGTTCTAATGCAATGTGTGAAAGAACTGGCAACAATGTATCCAGCAACGAAGTTTGTTCAAATCGTGTCGACGGATTGCATCCCTAACTATCCGGATTGCTATCTTCCCACTGTGTTAGTTTATAATAATGGTGCTGTGAAGGCAAGTTATGTCGGTTTACATAAATTTGGTCGAAGATGCACTCCTGAAGGTGTTGCTATGGTTCTATGCCAGTCAGATCCGGTGCTTAATGATGGGCAGAGCGGAGGTGAAGGTTCTAGAGAAGCCGTTCTTGAAGGAGTAAGGAAAAGGTTTATCGAGAAAGTGGTAACACTGCATGAAAACTATGATGATGACGATGGGTCTGCAAGTGACTAG 498 42.37 MKQGVKIANFGSIILISGSNFVHEVSQASSDVWVVVVLYKDGYPECGVLMQCVKELATMYPATKFVQIVSTDCIPNYPDCYLPTVLVYNNGAVKASYVGLHKFGRRCTPEGVAMVLCQSDPVLNDGQSGGEGSREAVLEGVRKRFIEKVVTLHENYDDDDGSASD 165
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g01330 165 Gene3D Glutaredoxin 5 129 - -
Hean15g01330 165 PANTHER VIRAL IAP-ASSOCIATED FACTOR HOMOLOG 1 159 IPR051498 GO:0005737(PANTHER)|GO:0006457(PANTHER)
Hean15g01330 165 Pfam Phosducin 12 98 IPR024253 -
Hean15g01330 165 SUPERFAMILY Thioredoxin-like 8 119 IPR036249 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g01330 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:15666035 Hean15g01330 Hean-Chr15:32377790 dispersed
Hean Hean-Chr15:32377790 Hean17g01917 Hean-Chr17:49467694 dispersed
Hean Hean-Chr15:32305394 Hean15g01330 Hean-Chr15:32377790 proximal