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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g01337 ATGGAGATGCAAAACGACTTCGATCGGCTTATGTTTTTCGAACATGCTCGCCGGAGTGCTGAAGTCACCTACGAGAAAAACCCTCTGGATTCCGAGAACTTAACTAGATGGGGAGGTGCGTTGCTTGAACTGTCCACGTTCCAGAGTGTTCAGGAATCAAAGTTGATGATCAAAGATGCGATATCGAAGTTGGATGAAGCATTGGCGATTGATCCGAAGAAACATGATGCTTTGTGGTGTATGGGGAATGCCCAAACTTCTTATGCTTTTTTGACTCCGGATAAAGATGAAGCAAAGGGTTATTTTGATTCAGCTTATGATTTCTTTGAGCAAGCTGTTAACGAGGATCCAGAGAACGAACTTTACCGCAAATCATTTGAAGTGGCTACAAAGGCTCCTGAATTACACTCAGAGCTGCATAAACAAGGTTTTAGTCAACAAGCAATGGGACCAGGGGCTGGGGGAGGTCCTTCAACTTCTTCAAGTGTCAAGGGTCCAAAAACACAAAAGAGCAGCGATCTGAAGTACGATATATTTGGATGGGTTATTCTTGCGGTTACCATTGTGGCTTGGGTTGGATTCGCCAAAGCAAATGTACCTTCACCACCTCCACGATAA 618 44.34 MEMQNDFDRLMFFEHARRSAEVTYEKNPLDSENLTRWGGALLELSTFQSVQESKLMIKDAISKLDEALAIDPKKHDALWCMGNAQTSYAFLTPDKDEAKGYFDSAYDFFEQAVNEDPENELYRKSFEVATKAPELHSELHKQGFSQQAMGPGAGGGPSTSSSVKGPKTQKSSDLKYDIFGWVILAVTIVAWVGFAKANVPSPPPR 205
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g01337 205 MobiDBLite consensus disorder prediction 152 169 - -
Hean15g01337 205 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 204 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Hean15g01337 205 MobiDBLite consensus disorder prediction 145 170 - -
Hean15g01337 205 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 196 - -
Hean15g01337 205 Gene3D Tetratricopeptide repeat domain 1 149 IPR011990 GO:0005515(InterPro)
Hean15g01337 205 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g01337 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:32775552 Hean17g00843 Hean-Chr17:16826246 dispersed
Hean Hean-Chr10:123279169 Hean15g01337 Hean-Chr15:32775552 transposed
Hean Hean-Chr13:162308141 Hean15g01337 Hean-Chr15:32775552 transposed
Hean Hean-Chr15:32775552 Hean17g01932 Hean-Chr17:49798259 wgd
Hean Hean-Chr15:32775552 Hean17g04335 Hean-Chr17:188640655 wgd