AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g01338 ATGCCTTCAATCCCAGAAGACCCAATCCTAACCCCAAACCCCGACAGATTCTGCATGTTCCCAATCCAATACCCACAAATCTGGGAAATGTACAAAAAGGCCGAAGCCTCATTCTGGACCGCAGAAGAAGTCGACTTATCACAAGACCAACAACACTGGGACTCCTTAACCGACAACGAACGTCACTTCATTACTCACGTACTCGCCTTCTTCGCTGCATCAGACGGCATTGTATTGGAAAACCTCGCTGGCCGCTTCATGAAAGAAGTACAGATCTCCGAGGCGCGTGCCTTTTACGGCTTTCAAATCGCGATTGAGAATATCCACTCTGAAATGTACAGTTTGCTGTTGGAATCGTACATCAAAGATTCTGTTGAAAAAAACCGTTTGTTCCGTGCTATTGAGACAATACCATGTGTACAGAAAAAGGCGAATTGGGCGATGAAGTGGATCGACGGTTCAGAATCGTTTGCAGAGAGAATAATTGCCTTTGCCTGTGTTGAAGGAATATTCTTTTCTGGTAGCTTTTGTGCTATTTTCTGGTTGAAGAAGCGTGGGTTGATGCCGGGTTTAACGTTCTCGAACGAGTTGATATCGCGAGACGAGGGTTTGCATTGCGATTTCGCTTGCTTGCTGTATAAGTTGTTGAATACAAAGTTGAGTGAGGAGCGGGTGAAAGGGATTGTGGCGGATGCGGTGGAGATTGAGAGGGAGTTTGTTTGTGATGCCTTACCCTGTGGGTTGGTTGGGATGAATGGTGGGTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGCTGGGGTCGTTAGGATGTGAGAAATTGTATGGCGTGTCGAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACGAATTTTTTTGAGAAGAGGGTTGGGGAGTATCAGAAGGCCTCGGTTATGTCGAATTTGAATGGAAATGGGGATACTCATGTGTTCAAGATGGATGAAGATTTTTAA 990 45.45 MPSIPEDPILTPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDQQHWDSLTDNERHFITHVLAFFAASDGIVLENLAGRFMKEVQISEARAFYGFQIAIENIHSEMYSLLLESYIKDSVEKNRLFRAIETIPCVQKKANWAMKWIDGSESFAERIIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYKLLNTKLSEERVKGIVADAVEIEREFVCDALPCGLVGMNGGLMSQYIEFVADRLLGSLGCEKLYGVSNPFDWMELISLQGKTNFFEKRVGEYQKASVMSNLNGNGDTHVFKMDEDF 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g01338 329 Gene3D Ribonucleotide Reductase, subunit A 3 307 IPR012348 GO:0016491(InterPro)
Hean15g01338 329 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 7 329 IPR000358 GO:0009263(InterPro)
Hean15g01338 329 ProSitePatterns Ribonucleotide reductase small subunit signature. 105 121 IPR030475 -
Hean15g01338 329 Pfam Ribonucleotide reductase, small chain 16 282 IPR000358 GO:0009263(InterPro)
Hean15g01338 329 SUPERFAMILY Ferritin-like 4 307 IPR009078 -
Hean15g01338 329 CDD RNRR2 17 291 IPR033909 GO:0009263(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g01338 K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
Hean15g01338 K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr12:11948426 Hean15g01338 Hean-Chr15:32787051 transposed
Hean Hean-Chr14:143190516 Hean15g01338 Hean-Chr15:32787051 wgd