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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g01356 ATGTCATCTCTCTGCGATTTCTGCAACCACCGATCAGCAGTCCTTTACTGCAAAGCCGATTCAGCTAAGCTCTGTTTGTTCTGCGACGCCGCCGTACACTCTGCCAACGCCTTATCTCTCAAACATTTCCGATCTCAGATCTGCGATAACTGCAGCTCCGACGCCGTCGCCGTCGCTTGTTCCACCGATAACCTCCTTCTCTGCTCCGCCTGCGACCACGACTTCCACGGCGACTCCTCAATTTCCTCGTTTCACAACCGTTTCACTGTCGATGAGATCTCCGGTTGCCCTAGCGTCACCGAACTCGCTTTCGTTTGGGGATTTAGCTTGAAACCGGTAGTATCCGAGTCTTCTAACGGTAATTCGTGTCAAAATAAGCATTCTGTTACGAATTTTGTTCAGGATTTACCGGCTATACGTGATGAGATTGAAACTCGTTATTGTTATGATGAGGTACCGAGTGTAGAGTGGAAATCACGAGGTTTAGGTTGTGGTGTGCATAAGAAGGTTTTGTATAAGCAGTTGTTGGAGCTTGCGAAGGAGCGGTGTGATGGAGAAGGAGGTGAATTAGGGCCGCAGACTCCGAGTGGATGCGGTCAGCCGGAGGTAGCGGAAGGTTTTGAGTTTGACGAACAGGAGGAGGATTTGTTGCATCAGCAAACTCCTTTGACGTATTTGCTAATGCCGAATCAGAATTGTTCGAATTCGAAAGGGAATGGGGTTACTGAGTTTAGTAATGTGTGGAGTTATAGTCCTAAACGGCATACAAGTCAGATATGGGATTTCAATCTAGGAAGATCAAGATCTGCTGAGGCAAGATGTGATAATCTTGGATTTGCAATAAACAACTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTGTTAAAAGAAATGGAGGCCATAAACATACCCATTGCCACAAATCCATCACAGAATATATCTGGTTGCGGATCAACAATGGAGAGTGACAACAGACAAATTGCCGGACCATCATCAGAAACAAAATTGATGGAAATCAACGGATGTGATTCGATCATGGATGGTCAGATGATAGACAGGTTTCTAGCAACTAGTCAAGGAATAGAAATACCAACAACAACAAAAGTGGATGCTCAGCAGTACGCGCAGAACAGATCCAATGCAATGCTACGCTACAAGGAGAAGAAGAAAACACGGAGGTACGAGAAGTGCATCCGTTACGAGTCCCGAAAAGCAAGGGCAGATACTAGAAAACGAGTAAAAGGCCGGTTTGTGAAGACAACCCAATAA 1281 45.67 MSSLCDFCNHRSAVLYCKADSAKLCLFCDAAVHSANALSLKHFRSQICDNCSSDAVAVACSTDNLLLCSACDHDFHGDSSISSFHNRFTVDEISGCPSVTELAFVWGFSLKPVVSESSNGNSCQNKHSVTNFVQDLPAIRDEIETRYCYDEVPSVEWKSRGLGCGVHKKVLYKQLLELAKERCDGEGGELGPQTPSGCGQPEVAEGFEFDEQEEDLLHQQTPLTYLLMPNQNCSNSKGNGVTEFSNVWSYSPKRHTSQIWDFNLGRSRSAEARCDNLGFAINNCTDLVEDASFTTMEVLKEMEAINIPIATNPSQNISGCGSTMESDNRQIAGPSSETKLMEINGCDSIMDGQMIDRFLATSQGIEIPTTTKVDAQQYAQNRSNAMLRYKEKKKTRRYEKCIRYESRKARADTRKRVKGRFVKTTQ 426
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g01356 426 Pfam CCT motif 382 424 IPR010402 GO:0005515(InterPro)
Hean15g01356 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 424 - -
Hean15g01356 426 ProSiteProfiles CCT domain profile. 382 424 IPR010402 GO:0005515(InterPro)
Hean15g01356 426 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Hean15g01356 426 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hean15g01356 426 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Hean15g01356 426 CDD Bbox1-BBX-like 4 47 IPR049808 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g01356 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr10:23022860 Hean15g01356 Hean-Chr15:33136269 dispersed
Hean Hean-Chr15:33136269 Hean4g04335 Hean-Chr4:204029250 dispersed
Hean Hean-Chr8:4064475 Hean15g01356 Hean-Chr15:33136269 transposed
Hean Hean-Chr15:33136269 Hean17g02147 Hean-Chr17:58886899 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g01223 WGDA 3 105 C2C2-CO-like Transcription Factor family AT4G27310 50.0 1.32e-31 113.0
Hean17g01894 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 43.662 1.22e-21 92.4
Hean17g02147 . 12 401 C2C2-CO-like Transcription Factor family AT2G33500 37.963 5.54e-74 235.0
Hean17g02529 . 1 168 C2C2-CO-like Transcription Factor family AT2G21320 52.535 5.06e-73 219.0
Hean17g02611 . 3 73 C2C2-CO-like Transcription Factor family AT4G27310 62.5 1.48e-26 100.0
Hean16g00811 WGDA 1 206 C2C2-CO-like Transcription Factor family AT1G75540 54.369 1.22e-63 201.0
Hean15g00285 WGDA 117 328 C2C2-CO-like Transcription Factor family AT2G47890 43.162 2.03e-44 150.0
Hean15g01297 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 40.141 7.65e-20 87.8
Hean15g01356 . 12 400 C2C2-CO-like Transcription Factor family AT2G33500 39.278 2.20e-79 249.0
Hean15g01931 WGDA 3 186 C2C2-CO-like Transcription Factor family AT5G54470 41.451 6.09e-28 103.0
Hean15g02161 . 192 340 C2C2-CO-like Transcription Factor family AT5G15850 32.258 1.96e-13 68.6
Hean15g02285 . 70 199 C2C2-CO-like Transcription Factor family AT1G75540 39.552 3.50e-25 95.9
Hean15g02768 . 236 328 C2C2-CO-like Transcription Factor family AT5G48250 43.617 3.42e-14 66.2
Hean14g01119 WGDA 245 386 C2C2-CO-like Transcription Factor family AT5G24930 31.126 1.26e-11 63.9
Hean14g02727 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 49.868 3.20e-120 352.0
Hean13g00231 . 68 141 C2C2-CO-like Transcription Factor family AT5G24930 75.676 9.01e-32 114.0
Hean13g00355 ACH,WGDA 1 277 C2C2-CO-like Transcription Factor family AT1G78600 47.872 2.89e-79 239.0
Hean13g00378 WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.242 2.53e-132 381.0
Hean13g00787 . 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 2.88e-10 58.2
Hean13g02136 . 193 341 C2C2-CO-like Transcription Factor family AT5G48250 49.342 1.72e-35 127.0
Hean13g02370 WGDA 3 165 C2C2-CO-like Transcription Factor family AT4G27310 42.424 1.19e-28 103.0
Hean13g02669 WGDA 45 405 C2C2-CO-like Transcription Factor family AT5G24930 47.619 1.38e-91 278.0
Hean12g00442 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.234 1.06e-101 303.0
Hean12g02239 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.331 3.18e-130 375.0
Hean11g00688 ACH,WGDA 1 371 C2C2-CO-like Transcription Factor family AT3G07650 53.695 5.09e-133 384.0
Hean10g00598 WGDA 10 328 C2C2-CO-like Transcription Factor family AT2G47890 46.418 7.86e-94 281.0
Hean10g01580 . 1 85 C2C2-CO-like Transcription Factor family AT3G21890 47.059 2.60e-20 76.6
Hean10g01582 . 1 213 C2C2-CO-like Transcription Factor family AT4G15250 34.649 5.23e-30 112.0
Hean10g02692 ACH 27 296 C2C2-CO-like Transcription Factor family AT1G78600 41.237 1.53e-56 182.0
Hean10g02709 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 49.784 1.24e-65 206.0
Hean10g02813 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.989 6.00e-131 376.0
Hean10g03057 . 289 399 C2C2-CO-like Transcription Factor family AT1G68520 43.243 1.24e-17 82.4
Hean9g03218 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 47.545 3.81e-103 307.0
Hean9g03887 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.149 2.25e-72 226.0
Hean8g00541 . 10 283 C2C2-CO-like Transcription Factor family AT1G68190 38.065 2.51e-55 184.0
Hean8g02505 . 164 270 C2C2-CO-like Transcription Factor family AT2G24790 32.759 9.57e-12 61.6
Hean8g03324 . 82 348 C2C2-CO-like Transcription Factor family AT5G15840 26.644 4.25e-16 75.9
Hean8g03425 WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.713 6.69e-76 233.0
Hean7g00695 . 92 141 C2C2-CO-like Transcription Factor family AT5G24930 76.0 4.19e-23 92.4
Hean7g02852 . 183 341 C2C2-CO-like Transcription Factor family AT5G48250 43.452 2.00e-27 105.0
Hean7g03249 . 275 332 C2C2-CO-like Transcription Factor family AT5G15850 48.276 9.21e-11 59.7
Hean6g02126 . 4 273 C2C2-CO-like Transcription Factor family AT2G24790 47.586 3.76e-75 231.0
Hean6g03017 WGDA 315 388 C2C2-CO-like Transcription Factor family AT5G24930 41.333 2.14e-11 63.2
Hean5g02602 ACH,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.761 8.67e-74 228.0
Hean5g03307 . 258 334 C2C2-CO-like Transcription Factor family AT5G57660 40.964 7.99e-15 67.4
Hean5g03308 . 283 334 C2C2-CO-like Transcription Factor family AT5G57660 53.846 6.74e-15 68.2
Hean4g00007 . 3 221 C2C2-CO-like Transcription Factor family AT3G21150 27.039 9.74e-15 68.6
Hean4g04335 ACH,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.43 3.64e-130 376.0
Hean4g04475 WGDA 1 204 C2C2-CO-like Transcription Factor family AT1G75540 51.961 2.88e-63 196.0
Hean3g02204 ACH,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.412 1.06e-135 390.0
Hean3g02273 ACH,WGDA 1 297 C2C2-CO-like Transcription Factor family AT1G78600 51.14 1.17e-92 275.0
Hean3g02483 WGDA 4 135 C2C2-CO-like Transcription Factor family AT5G54470 50.0 1.96e-30 109.0
Hean3g02929 WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 50.129 2.58e-96 291.0
Hean3g03586 WGDA 228 340 C2C2-CO-like Transcription Factor family AT5G15850 35.088 1.87e-12 65.5
Hean2g03374 . 334 393 C2C2-CO-like Transcription Factor family AT5G24930 48.333 2.52e-12 65.9
Hean1g02866 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 49.091 1.98e-11 63.2
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean CCT 1.7e-15 CL0281 TF C2C2-CO-like