AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g03909 ATGTTGCCCGCCCAGCCTTGGAAAAAAAATCAAAGAATTCAAGTTTCCGAAAGAAAAGATAACACGGATGCGATGGCCCGCGCATGCTGGGACAAAAGAGAGCAGGTTGATAAATATAGACGAGCCATCCAAGCCATGCGGGATCTCCCCGAAGATCACCCGCACAGCTTCGTCAACCAAGCTAAAATTCATTGTGCGTACTGCAACGGCGGTTACACACAAGTCGATAACGGTTTCCCTGATATCGAAATTCAGATTCACAATTCGTGGCTCTTCTTTCCGTTCCATCGGTGGTACCTTTATTTCTACGAAAGAATACTCGGAAAGTTGATTAATGATCCGACTTTCGCCTTACCATTTTGGAAGTGGGACGAACCCGTCGGAATGCCGATTCCGGAAATGTTTTTACCGGAAGTTGTTAATGGCAAGCCAAACTCGTTGTATGACGTTTACAGGGATGAAATTCATATCAAACAAAGATTAGTAGATCTAGACTACGATGGAAACGACAAAGACATTACAAATCAGACACAAGTACTCTGCAATCTTAGCACAGTGTACCGAGACTTGGTCCGAAACGGAGCCGACACAATAAGCTTCTTCGGTGGCGAATACAAAGCCGGGAACTCCCCGATTAAAAACGGTGATCCGTCGGTCGGATCGGTGGAAGCCGGTTCTCACACGGCCGTGCACAGATGGGTAGGTGACCGAAAAAAGCGTAACGGCGAGGACATGGGTAACTTCTACTCCGCAGGGTATGATCCTGTGTTCTACATCCATCATTCTAATGTGGACCGTATGTGGAAGCTATGGAAGGAGTTAGGGATCAAAGGACACAATGAACCGACTGATCCCGATTGGTTGAACGCGTCGTATGTGTTCTACGACGAGAATGAGGAGCTTGTACGCGTGTATAACAAAGACTGTGTCAACATACGGAAGCTCAACTACGATTTCATCGAAAATTCCAAAGAAGTGTTCCCCTGGCGTAAGAGTCGGCCGGCTAGACGTAACAAGAAGTCGCAGGTTGAGCCGACTGCAACGGTGGAAACAGTGGACAAAATAAAGTTCCCGGTGCGGCTTAACGAGATACTGAAGGTTAAAGTGAAGCGGCCTGCGGTGAACCGAAGTGAAGCCGAAAAGGCTAAAGCCAACGAGGTGTTGGTGATAAAGAAGATAAGATACGATAGTGGGAGGTTTGTGAAGTTTGATGTGTTTGTGAATGACAAGGTTAAACCCGGTGAAATAACGACTCCGTGTGATCCGGAGTACGCGGGTGGTTTCGCACAGCTTCCGCACAACGATATGAAGAACATGTTTATGGGTAGTTCGGCGCGGTTTGGGCTAACTGAGTTGATAGAGGACACGAATACTGATGGCGAAGAGTATGCGACGGTGACGCTGGTGCCAAGGACCGGATGCGACGATCTTACCATTGGCGAGATCAAGATCCAGTTGGTTCCTATCTTGGCCTAG 1476 47.76 MLPAQPWKKNQRIQVSERKDNTDAMARACWDKREQVDKYRRAIQAMRDLPEDHPHSFVNQAKIHCAYCNGGYTQVDNGFPDIEIQIHNSWLFFPFHRWYLYFYERILGKLINDPTFALPFWKWDEPVGMPIPEMFLPEVVNGKPNSLYDVYRDEIHIKQRLVDLDYDGNDKDITNQTQVLCNLSTVYRDLVRNGADTISFFGGEYKAGNSPIKNGDPSVGSVEAGSHTAVHRWVGDRKKRNGEDMGNFYSAGYDPVFYIHHSNVDRMWKLWKELGIKGHNEPTDPDWLNASYVFYDENEELVRVYNKDCVNIRKLNYDFIENSKEVFPWRKSRPARRNKKSQVEPTATVETVDKIKFPVRLNEILKVKVKRPAVNRSEAEKAKANEVLVIKKIRYDSGRFVKFDVFVNDKVKPGEITTPCDPEYAGGFAQLPHNDMKNMFMGSSARFGLTELIEDTNTDGEEYATVTLVPRTGCDDLTIGEIKIQLVPILA 491
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g03909 491 Pfam Protein of unknown function (DUF-B2219) 357 486 IPR022740 GO:0004097(InterPro)
Hean15g03909 491 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 254 265 IPR002227 GO:0016491(InterPro)
Hean15g03909 491 MobiDBLite consensus disorder prediction 1 20 - -
Hean15g03909 491 ProSitePatterns Tyrosinase CuA-binding region signature. 87 104 IPR002227 GO:0016491(InterPro)
Hean15g03909 491 PANTHER TYROSINASE FAMILY MEMBER 18 450 IPR050316 -
Hean15g03909 491 Pfam Common central domain of tyrosinase 55 273 IPR002227 GO:0016491(InterPro)
Hean15g03909 491 PRINTS Tyrosinase copper-binding domain signature 87 104 IPR002227 GO:0016491(InterPro)
Hean15g03909 491 PRINTS Tyrosinase copper-binding domain signature 226 237 IPR002227 GO:0016491(InterPro)
Hean15g03909 491 PRINTS Tyrosinase copper-binding domain signature 253 271 IPR002227 GO:0016491(InterPro)
Hean15g03909 491 PRINTS Tyrosinase copper-binding domain signature 118 123 IPR002227 GO:0016491(InterPro)
Hean15g03909 491 SUPERFAMILY Di-copper centre-containing domain 32 319 IPR008922 -
Hean15g03909 491 Gene3D - 3 325 IPR008922 -
Hean15g03909 491 Pfam Polyphenol oxidase middle domain 282 334 IPR022739 GO:0004097(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g03909 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
100878 Hean10g02861 Hean15g03909
102584 Hean15g03909 Hean3g02237
402154 Hean11g00764 Hean15g03909
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:148529006 Hean17g03333 Hean-Chr17:134972919 dispersed
Hean Hean-Chr15:148471990 Hean15g03909 Hean-Chr15:148529006 proximal