AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean15g03966 ATGGCGAGTCGCACTCTCCTTCGCATACTCCTCTCCTCCACCAACCAAACCCTAATTCACCGTTCCTCCACAACCTCTTCTTACCTCCTACGATTCCGCCCTGTTGCCGCCATCGCCGCCGCTGATTTCCGCCAGTCTCCCGTTGCAGCCACCGATGTCCGTACGTTCTCATCTCGTCCGACCACATCTTCTCTAAACGATTCGAGCCCTAACTGGTCCAATCGTCCACCAAAGGAGACGATTCTTCTTGACGGTTGTGATTTTGAGCACTGGCTTGTTGTTGTTGATAAACCTGAAGGCGAGCCTACGCGAGATGAGATTATTGAATCGTATATTAATACTCTAGCGAAAGTTGTTGGCAGCTATGATGAAGCAAGGATGAAAATCTACTCAGTTTCGACAAGATGCTATTATGCATTTGGAGCTCTTGTGTCTGAAGAACTTTCTTATAAGCTGAAGGAATTACCAGGAGTTCGTTGGGTGCTCCCGGATTCTTACTTGGATGTTAAGAACAAGGATTATGGAGGTGAACCGTTCATCGATGGGAAGGCTGTTCCGTATGATCCAAGGTACCATGAGGAATGGATCAAAAACAATGAGCGTGCCAACCAGAGAAACAAAAGAAATACGCCACGCAACAATGAAAGGCCAAGGAATTTTGAACGAAGACGAGAGAACATGCAAAACAACCGTGGCCCACCGAACATGGACGGTCCTCCACCTAACATGAGGCCACAAGGTCCACCTTCACCACCCTACAACAGAGGGCCACCACAAAGTCCACCACCACCCTACAATGCAGGGCCACAAAGTCCTCCACCACCCTACAACGCAGGGCCACCAAACACGAGACCTCAAAACCCACCTAACTACCAGCATCAGGGGCAGTATGGGCCAAACAGTGGATGGATGCCTAATAATGCTGCTCCTAACTACCAGCAGCAGGGGCAGTATGGGCCAAACAACCCTGACTACCAGCAACAGGGGCAGTACCAATCTGGACCTGGGCCCAACAGTTATCTGCCAAATCAAAACCCATACCAGCCTCCTCAGGATGTACCTGGAAGAGACATGCCCCCTGCAGCTAACTACAAATGA 1098 50.0 MASRTLLRILLSSTNQTLIHRSSTTSSYLLRFRPVAAIAAADFRQSPVAATDVRTFSSRPTTSSLNDSSPNWSNRPPKETILLDGCDFEHWLVVVDKPEGEPTRDEIIESYINTLAKVVGSYDEARMKIYSVSTRCYYAFGALVSEELSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPRYHEEWIKNNERANQRNKRNTPRNNERPRNFERRRENMQNNRGPPNMDGPPPNMRPQGPPSPPYNRGPPQSPPPPYNAGPQSPPPPYNAGPPNTRPQNPPNYQHQGQYGPNSGWMPNNAAPNYQQQGQYGPNNPDYQQQGQYQSGPGPNSYLPNQNPYQPPQDVPGRDMPPAANYK 365
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean15g03966 365 Pfam Multiple organellar RNA editing factor 1, MORF domain 88 179 IPR054059 -
Hean15g03966 365 MobiDBLite consensus disorder prediction 196 228 - -
Hean15g03966 365 MobiDBLite consensus disorder prediction 234 287 - -
Hean15g03966 365 MobiDBLite consensus disorder prediction 54 76 - -
Hean15g03966 365 MobiDBLite consensus disorder prediction 196 365 - -
Hean15g03966 365 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 8 228 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Hean15g03966 365 MobiDBLite consensus disorder prediction 342 356 - -
Hean15g03966 365 MobiDBLite consensus disorder prediction 288 341 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean15g03966 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
100829 Hean10g02668 Hean15g03966
402165 Hean11g00925 Hean15g03966
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:153500310 Hean16g02738 Hean-Chr16:139254577 dispersed
Hean Hean-Chr15:174479988 Hean15g03966 Hean-Chr15:153500310 transposed
Hean Hean-Chr13:135377552 Hean15g03966 Hean-Chr15:153500310 transposed
Hean Hean-Chr10:144302344 Hean15g03966 Hean-Chr15:153500310 wgd
Hean Hean-Chr11:22567122 Hean15g03966 Hean-Chr15:153500310 wgd